Non-Coding RNA Search

Ss1.1-Mixc-0027f08.3

Sequence:


               
               GTGCTTTTAATCTGTTTTGAAACACGATTAATTAATATTATCACTTAGTATACACTTAAA
CTTCCCAACCAATTTTATCTCATTTTGTTTTTCTGGGATCAGTTTGCTTCTTGCTAATGT
ATATCTTTTAGAAATTCTCCAGTGAAACAGTCCTCCGTCTGTGCCTTAAAATGTTTTTGC
CGCATTTTTTTTTTTTTTTCCATGCCCACAGGATGTGAATGTTCCCAGGCCAGGGACTGA
ACCTGTGCCACAGCAGTGATCCAAGCCAGTACAATGACAACACCAGATCCTTAATCTTCT
GCAACACCAAGAGAATGCTTGTTTGTCCCATTCTGACTGCTGTTTTTCCTTTATCATTTT
GAATGTATTATTCCATTGTCTTTTTAAAAAATATTATATTGGAGTATAGTTGATTTACAG
TGTTGTGTTAGTTTCAGGTGTACAGCAAAGTGATTGACCTATGCATATATCTTTGCTTTT
TCAGATTCTTTCCCCTTATAGTTTATTACAAAATATTTAGCGGAGTTCTATACCATAAGT
CCTTGTTGATTATCTATTGTATACATAGCAGTGTATGTTAATTCCAAACTTATTCCTCCA
TCCCTCACCTTTCCCCTTTTTAACCATAAGTTTGTTTTCTAAGACTGTGAGTCTGTTTCT
GTTTTGTAAATAAGATCATTTGTATCATTCTTTTAGATTACACTTCTAAGTAATAATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCTTTTAATCTGTTTTGAAACACGATTAATTAATATTATCACTTAGTATACACTTAAA
CTTCCCAACCAATTTTATCTCATTTTGTTTTTCTGGGATCAGTTTGCTTCTTGCTAATGT
ATATCTTTTAGAAATTCTCCAGTGAAACAGTCCTCCGTCTGTGCCTTAAAATGTTTTTGC
CGCATTTTTTTTTTTTTTTCCATGCCCACAGGATGTGAATGTTCCCAGGCCAGGGACTGA
ACCTGTGCCACAGCAGTGATCCAAGCCAGTACAATGACAACACCAGATCCTTAATCTTCT
GCAACACCAAGAGAATGCTTGTTTGTCCCATTCTGACTGCTGTTTTTCCTTTATCATTTT
GAATGTATTATTCCATTGTCTTTTTAAAAAATATTATATTGGAGTATAGTTGATTTACAG
TGTTGTGTTAGTTTCAGGTGTACAGCAAAGTGATTGACCTATGCATATATCTTTGCTTTT
TCAGATTCTTTCCCCTTATAGTTTATTACAAAATATTTAGCGGAGTTCTATACCATAAGT
CCTTGTTGATTATCTATTGTATACATAGCAGTGTATGTTAATTCCAAACTTATTCCTCCA
TCCCTCACCTTTCCCCTTTTTAACCATAAGTTTGTTTTCTAAGACTGTGAGTCTGTTTCT
GTTTTGTAAATAAGATCATTTGTATCATTCTTTTAGATTACACTTCTAAGTAATAATATG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               343-700, gnl|bosTau2|chr1 (53370341-53369966)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               343-700, gnl|bosTau2|chr1 (53370341-53369966)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               spc (0.113366)

	cbe (0.239234)
	aor (0.195274)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	hyp (0.142837)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	spc (0.113366)