Ss1.1-Mixc-0027g03.3
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GAAGAAGTTCCAGTCCCAGCTCTGGCCCCAGCAGAGGCCCCAGGCCTGGCAAAGATCCCA
GCTCCAGCGGAGGCCTCAGAGCCAGCCTTGGTCCTGCCAGAGGCCCCCACAGAGGCTTCC
GCCTCAGAGGAGACCCCAGCAGAGGCCTCAGCAGGGGCCTCAGTCCCGGCCCCAGCAGAG
GGCACGGCACAAGCTGAGGCCCCTGCCCAGTACCCAAGTGAACGCCTGATCCAGTCCATG
TCGGAGGAGAATCAGATTCCCTCGCACCTGCCTGCCTGCCCGTCCCTCCAGCACATTGCC
AGCCTGCAGGGGAGTGCCGTCGTCGAGTTCTTCCACAACAGCATTGCTGAGGTGGAAAAT
GAGGAGCTGCGACACCTCCTGTGGTCATCAGTGGTGTTCTACCAGACCCCGGGGCTGGAG
GTGACAGCCTGCGTGCTGCTCTCCACAAAGGCTGTGTACTTTGTGCTGCATGACGGCCTC
CGCCGCTACTTTTCTGAGCCGCTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAAC
AACAGTCCATTCCACATCTCCCAGTGCTTTGTTTTAAAACTCAGCGACCTGCAGACAGTC
AACGTTGGGCTTTTCGACCAGTATTTCCGGCTGACTGGTTCCTCCCCGGCGCAGGTGGTT
ACATGCTTGACACGGGACAGCTACCTGACACACTGCTTCCTCCAGCACGTCATGGCTGTG
CTGTCCCTGCTAGAACGCACACCCTCTCCTGAGCCTGTCGACAAAGACTTCTACTCTGAG
TTTGGAAACAAGACCACAGGAAAGGTGGAGAACTACGAGCTGATCCACTCGAGCCGCGTC
AAGTTCACCTACCCCAGCGAGGAGGAGATCGGGGACCTGACGTTCACTGTGGCCCAGAAG
ATGGCTGACCCAGAGAAGGCACCGGGCCTCAGCATCCTGCTGTACGTGCAAGCTTTCCAG
GTGGGCATGCCACTACCTGGGCGCTGTAGGGGCCTGCTGCGCCCCAAGACGTTGCTGCTC
ACCAGCGCCGAGATCTTCCTTCTGGATGAGGACTTCGTCCACTACCCGCTGCCCGAGTTC
GCCAAGGAGCCTCCACAGAGGGACCGGTACCGACTGGATGATGGCCGCCGCGTCCGGGAC
CTGGACCGCGTGCTCATGGGCTACCAGACATACCCGCAGGCCCTCACCCTGGTCTTTGAT
GATGTTCAGGGCCACGACCTCATGGGCAGCGTCACCCTGGACCACTTTGGGGAGGAGCCA
GGGGGCCCAGCCAGAGCTGGCCAGGGCCGCGAGGTCCAGTGGCAAGTGTTCATCCCTAGT
GCTGAGAGCCGCGAGAAGCTCATCTCACTGTTAGCCCGCCAGTGGGAGGCTCTGTGCGGC
CGGGAGCTGCCCGTGGAACTCACCGGCTAGCTCACCATGTCTGGCCTGGTGTCCACTCAG
GGCGGGAAAGGAGGCTTTCTTTGTTCTTTTAAAAATGTTTTCTTCTCTCTTGGTACCTTC
ATTTGACTGTCCTCCCAGAGAATGTGAACTGTGTGTTCAATTGGTTCTGTCTTGAGAGTG
AAAGTGCCGGCCCCTCCAGGGTCTCCGGGTACCATCAGCTTCCCGTGGATCTGCCTGTCC
CTGGTGCCACATGGCCGGGCACACCAGTGTCGTATCTTCTGTCGTGGGACTGTTGTTAAC
GTTGCACCGTGGTTCTGGTTTACTCTTTTACACGTCCTTTCCTGAGATGTGAAGTCCAGT
CTTGTTACTGTTGTTGTCATTGTGGGCACCTGCTGCTAATTATGAAGCTGGCCGCACAGT
GCACATTGAAAGCTCCTGCCCTGTGCAGTTTTCCAAAGGGGAAGCCTCTCCGGGACCAGA
CAAGTGGGAATGAGAGCCCTGTGGGGCAGGAGTCCCCCAGGCCTTGAGGCTGAGAGGGCT
GGGGGCAGGGGACCTACAGCTGCCAGCCCCAAGTGTGATTCCTGTTGCCTATTTTCTCTA
TTCCATAAAGCCAAGTTTGACACA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GAAGAAGTTCCAGTCCCAGCTCTGGCCCCAGCAGAGGCCCCAGGCCTGGCAAAGATCCCA
GCTCCAGCGGAGGCCTCAGAGCCAGCCTTGGTCCTGCCAGAGGCCCCCACAGAGGCTTCC
GCCTCAGAGGAGACCCCAGCAGAGGCCTCAGCAGGGGCCTCAGTCCCGGCCCCAGCAGAG
GGCACGGCACAAGCTGAGGCCCCTGCCCAGTACCCAAGTGAACGCCTGATCCAGTCCATG
TCGGAGGAGAATCAGATTCCCTCGCACCTGCCTGCCTGCCCGTCCCTCCAGCACATTGCC
AGCCTGCAGGGGAGTGCCGTCGTCGAGTTCTTCCACAACAGCATTGCTGAGGTGGAAAAT
GAGGAGCTGCGACACCTCCTGTGGTCATCAGTGGTGTTCTACCAGACCCCGGGGCTGGAG
GTGACAGCCTGCGTGCTGCTCTCCACAAAGGCTGTGTACTTTGTGCTGCATGACGGCCTC
CGCCGCTACTTTTCTGAGCCGCTGCAGGATTTCTGGCATCAGAAAAACACCGACTACAAC
AACAGTCCATTCCACATCTCCCAGTGCTTTGTTTTAAAACTCAGCGACCTGCAGACAGTC
AACGTTGGGCTTTTCGACCAGTATTTCCGGCTGACTGGTTCCTCCCCGGCGCAGGTGGTT
ACATGCTTGACACGGGACAGCTACCTGACACACTGCTTCCTCCAGCACGTCATGGCTGTG
CTGTCCCTGCTAGAACGCACACCCTCTCCTGAGCCTGTCGACAAAGACTTCTACTCTGAG
TTTGGAAACAAGACCACAGGAAAGGTGGAGAACTACGAGCTGATCCACTCGAGCCGCGTC
AAGTTCACCTACCCCAGCGAGGAGGAGATCGGGGACCTGACGTTCACTGTGGCCCAGAAG
ATGGCTGACCCAGAGAAGGCACCGGGCCTCAGCATCCTGCTGTACGTGCAAGCTTTCCAG
GTGGGCATGCCACTACCTGGGCGCTGTAGGGGCCTGCTGCGCCCCAAGACGTTGCTGCTC
ACCAGCGCCGAGATCTTCCTTCTGGATGAGGACTTCGTCCACTACCCGCTGCCCGAGTTC
GCCAAGGAGCCTCCACAGAGGGACCGGTACCGACTGGATGATGGCCGCCGCGTCCGGGAC
CTGGACCGCGTGCTCATGGGCTACCAGACATACCCGCAGGCCCTCACCCTGGTCTTTGAT
GATGTTCAGGGCCACGACCTCATGGGCAGCGTCACCCTGGACCACTTTGGGGAGGAGCCA
GGGGGCCCAGCCAGAGCTGGCCAGGGCCGCGAGGTCCAGTGGCAAGTGTTCATCCCTAGT
GCTGAGAGCCGCGAGAAGCTCATCTCACTGTTAGCCCGCCAGTGGGAGGCTCTGTGCGGC
CGGGAGCTGCCCGTGGAACTCACCGGCTAGCTCACCATGTCTGGCCTGGTGTCCACTCAG
GGCGGGAAAGGAGGCTTTCTTTGTTCTTTTAAAAATGTTTTCTTCTCTCTTGGTACCTTC
ATTTGACTGTCCTCCCAGAGAATGTGAACTGTGTGTTCAATTGGTTCTGTCTTGAGAGTG
AAAGTGCCGGCCCCTCCAGGGTCTCCGGGTACCATCAGCTTCCCGTGGATCTGCCTGTCC
CTGGTGCCACATGGCCGGGCACACCAGTGTCGTATCTTCTGTCGTGGGACTGTTGTTAAC
GTTGCACCGTGGTTCTGGTTTACTCTTTTACACGTCCTTTCCTGAGATGTGAAGTCCAGT
CTTGTTACTGTTGTTGTCATTGTGGGCACCTGCTGCTAATTATGAAGCTGGCCGCACAGT
GCACATTGAAAGCTCCTGCCCTGTGCAGTTTTCCAAAGGGGAAGCCTCTCCGGGACCAGA
CAAGTGGGAATGAGAGCCCTGTGGGGCAGGAGTCCCCCAGGCCTTGAGGCTGAGAGGGCT
GGGGGCAGGGGACCTACAGCTGCCAGCCCCAAGTGTGATTCCTGTTGCCTATTTTCTCTA
TTCCATAAAGCCAAGTTTGACACA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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151-353, gnl|bosTau2|chr22 (37127221-37127019) |
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151-353, gnl|Hg17|chr3 (52498558-52498736) |
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151-353, gnl|Mm7|chr14 (28604107-28603901) |
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508-639, gnl|bosTau2|chr22 (37125987-37125856) |
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508-639, gnl|canFam2|chr20 (40276730-40276573) |
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508-639, gnl|danRer3|chrNA (95929861-95930020) |
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508-639, gnl|dasNov1|scaffold_90074 (9634-9478) |
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508-639, gnl|galGal2|chr12 (518019-518134) |
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508-639, gnl|hg17|chr3 (52499714-52499865) |
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508-639, gnl|Hg17|chr3 (52499760-52499891) |
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508-639, gnl|loxAfr1|scaffold_19767 (466-309) |
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508-639, gnl|mm7|chr14 (28602859-28602737) |
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508-639, gnl|Mm7|chr14 (28602840-28602709) |
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508-639, gnl|monDom2|scaffold_5 (70553650-70553523) |
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508-639, gnl|panTro1|chr2 (54116690-54116840) |
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508-639, gnl|rheMac2|chr2 (83884851-83884700) |
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508-639, gnl|rn3|chr16 (6603740-6603620) |
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797-1416, gnl|bosTau2|chr22 (37124456-37123836) |
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797-1416, gnl|Hg17|chr3 (52500925-52501540) |
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797-1416, gnl|Mm7|chr14 (28601828-28601207) |
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1655-2004, gnl|bosTau2|chr3 (47914391-47914044) |
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1655-2004, gnl|Hg17|chr3 (52501791-52502120) |
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1655-2004, gnl|Mm7|chr14 (28600905-28600578) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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151-353, gnl|bosTau2|chr22 (37127221-37127019) |
|
151-353, gnl|Hg17|chr3 (52498558-52498736) |
|
151-353, gnl|Mm7|chr14 (28604107-28603901) |
| |
|
508-639, gnl|bosTau2|chr22 (37125987-37125856) |
|
508-639, gnl|canFam2|chr20 (40276730-40276573) |
|
508-639, gnl|danRer3|chrNA (95929861-95930020) |
|
508-639, gnl|dasNov1|scaffold_90074 (9634-9478) |
|
508-639, gnl|galGal2|chr12 (518019-518134) |
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508-639, gnl|hg17|chr3 (52499714-52499865) |
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508-639, gnl|Hg17|chr3 (52499760-52499891) |
|
508-639, gnl|loxAfr1|scaffold_19767 (466-309) |
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508-639, gnl|mm7|chr14 (28602859-28602737) |
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508-639, gnl|Mm7|chr14 (28602840-28602709) |
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508-639, gnl|monDom2|scaffold_5 (70553650-70553523) |
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508-639, gnl|panTro1|chr2 (54116690-54116840) |
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508-639, gnl|rheMac2|chr2 (83884851-83884700) |
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508-639, gnl|rn3|chr16 (6603740-6603620) |
| |
|
797-1416, gnl|bosTau2|chr22 (37124456-37123836) |
|
797-1416, gnl|Hg17|chr3 (52500925-52501540) |
|
797-1416, gnl|Mm7|chr14 (28601828-28601207) |
| |
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1655-2004, gnl|bosTau2|chr3 (47914391-47914044) |
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1655-2004, gnl|Hg17|chr3 (52501791-52502120) |
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1655-2004, gnl|Mm7|chr14 (28600905-28600578) |
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elu (0.385356) |
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ese (0.379507) |
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jca (0.34188) |
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ebs (0.236602) |
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med (0.232504) |
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mas (0.210305) |
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fcc (0.197785) |
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col (0.195008) |
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fty (0.17584) |
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eye (0.170503) |
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fhi (0.169578) |
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nco (0.161734) |
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fat (0.147427) |
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lnt (0.142308) |
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cov (0.132153) |
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eep (0.122564) |
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eru (0.120048) |
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elu (0.385356) |
|
ese (0.379507) |
|
jca (0.34188) |
|
ebs (0.236602) |
|
med (0.232504) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
col (0.195008) |
|
fty (0.17584) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
nco (0.161734) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
cov (0.132153) |
|
eep (0.122564) |
|
eru (0.120048) |
