Non-Coding RNA Search

Ss1.1-Mixc-0027g04.5

Sequence:


               
               CGGAAGTGAAGGAGCAGCCGGAAGTAGCCGGAATCCCAGGCTGACTGACCGGCGAACGGT
CTTTGACAGGAGCCGGAGCTGCGCGGGGGAGTTGGCGGCCATGGAGTTGGGCGAGCTGCT
CTACAACAAGTCTGAGTACATCGAGACGGCATCTGGGAACAAAGTTAGTCGCCAGTCTGT
GTTGTGTGGAAGTCAGAACATCGTTCTTAATGGCAAGACCATTGTGATGAATGACTGTAT
TATCCGAGGGGATCTGGCAAATGTCAGAGTTGGACGTCATTGTGTCGTGAAAAGTCGGAG
TGTCATAAGGCCACCATTCAAGAAATTCAGCAAAGGTGTTGCATTTTTTCCTTTACACAT
TGGGGACCATGTCTTTATTGAGGAAGACTGTGTGGTCAACGCAGCTCAGATCGGCTCTTA
TGTTCACGTTGGCAAGAACTGTGTGATTGGGCGCCGGTGTGTGTTGAAAGACTGTTGCAA
AATTCTTGACAACACAGTATTACCCCCAGAAACCGTGGTCCCACCATTCACCGTCTTCTC
AGGCTGCCCAGGACTCTTCTCAGGGGAGCTCCCAGAATGTACCCAGGAGCTGATGATCGA
CGTCACCAAGAGCTACTACCAGAAGTTTTTGCCCTTGACACAGGTCTAATGTCTCTGCCT
GTGTCTTGAATTCGCTTGAGCTCTAAGATGGACTTTGGGGACCGAGTAAGCCCGTCAGCA
TCTACAAAGAGCTCTTGTGTCTTTGACACCTCCCACCCTCTTTTTTTTTTTAATTTTTAT
TTTATTTAATTCTTTAGAATTTCTCAATCCTTCCAGGCTCTCAGCTCTTAAGACTTTAAT
AACAGAACGTCTGGAAGAGTTGTCTCCAAATGCTGTGCTTAAACCCTGTCTGTTAGCAGT
CACTTGGTACCATACATGGAACACAGAATCATCTGTTCCCAACACTCCCGCCCCCATGGA
TGGCTGGGTGGAGCAGGGCCCTCCGTCCCAACGTGGAGGTGGTGATGCTCATGCGCTGCC
CGTGGCCACAGCCACCACAGTGCCCGCCACTCACAGGGATCCCGCTCAGCTGCCGTTGCC
GCTCATACCTTTGGCCAGTCGCCACAGCTGCTCACAGTCTTGGAAAAAAGTTTGTGACTT
TTCAGAGTCCAGATCCTCGTGGGCTACTAAAACTCGACGGAAAGGTGGTTGGTATTTCTC
TTCTTTGCAGAATGAGCTGAACTGTCATTTTAACCCAGGGTGACTGACTAATAAAAGACT
TCCTAGCATTCTAGTCTAGGGCCTTTGGCTTTCACTAAAAGGGGGCCTCTCGGCACCCAG
ATTTTATTTTTGCAAAGTCCAAGTTTTGAGTCTCGCACGTGGATGGATTCGCCTAGCAGC
CATTCTGTGCCTGCCTCACAATATTTGGGGGCAGTAGTATATGCCTTGTTTCACCGGCGG
TGTAGCATTTGTGACACTTGCTCCCTGGCCTAGAACCATTCAGCCCACCCTGTATTTGCC
ATAAACCTCACAGTTCAGACCAAATTATCTGTCCTTGGGCCCAATCTCATATTTACATGG
GGGCCTCTTAAAATTCTTCTGTGGGCATAGAGCCTCAAGGAGTAAAAGAAGTTGCCAGTG
CTGGTCTTAGCATCTTCTGGGTAATGGCACAACCTTTCCCCTTCTGCTCTGGCCTCTTAG
TTTAGGAGGAAGACTTAGAAGTGAAGGCCTGGGGAGTTCTCTTGCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAAGTGAAGGAGCAGCCGGAAGTAGCCGGAATCCCAGGCTGACTGACCGGCGAACGGT
CTTTGACAGGAGCCGGAGCTGCGCGGGGGAGTTGGCGGCCATGGAGTTGGGCGAGCTGCT
CTACAACAAGTCTGAGTACATCGAGACGGCATCTGGGAACAAAGTTAGTCGCCAGTCTGT
GTTGTGTGGAAGTCAGAACATCGTTCTTAATGGCAAGACCATTGTGATGAATGACTGTAT
TATCCGAGGGGATCTGGCAAATGTCAGAGTTGGACGTCATTGTGTCGTGAAAAGTCGGAG
TGTCATAAGGCCACCATTCAAGAAATTCAGCAAAGGTGTTGCATTTTTTCCTTTACACAT
TGGGGACCATGTCTTTATTGAGGAAGACTGTGTGGTCAACGCAGCTCAGATCGGCTCTTA
TGTTCACGTTGGCAAGAACTGTGTGATTGGGCGCCGGTGTGTGTTGAAAGACTGTTGCAA
AATTCTTGACAACACAGTATTACCCCCAGAAACCGTGGTCCCACCATTCACCGTCTTCTC
AGGCTGCCCAGGACTCTTCTCAGGGGAGCTCCCAGAATGTACCCAGGAGCTGATGATCGA
CGTCACCAAGAGCTACTACCAGAAGTTTTTGCCCTTGACACAGGTCTAATGTCTCTGCCT
GTGTCTTGAATTCGCTTGAGCTCTAAGATGGACTTTGGGGACCGAGTAAGCCCGTCAGCA
TCTACAAAGAGCTCTTGTGTCTTTGACACCTCCCACCCTCTTTTTTTTTTTAATTTTTAT
TTTATTTAATTCTTTAGAATTTCTCAATCCTTCCAGGCTCTCAGCTCTTAAGACTTTAAT
AACAGAACGTCTGGAAGAGTTGTCTCCAAATGCTGTGCTTAAACCCTGTCTGTTAGCAGT
CACTTGGTACCATACATGGAACACAGAATCATCTGTTCCCAACACTCCCGCCCCCATGGA
TGGCTGGGTGGAGCAGGGCCCTCCGTCCCAACGTGGAGGTGGTGATGCTCATGCGCTGCC
CGTGGCCACAGCCACCACAGTGCCCGCCACTCACAGGGATCCCGCTCAGCTGCCGTTGCC
GCTCATACCTTTGGCCAGTCGCCACAGCTGCTCACAGTCTTGGAAAAAAGTTTGTGACTT
TTCAGAGTCCAGATCCTCGTGGGCTACTAAAACTCGACGGAAAGGTGGTTGGTATTTCTC
TTCTTTGCAGAATGAGCTGAACTGTCATTTTAACCCAGGGTGACTGACTAATAAAAGACT
TCCTAGCATTCTAGTCTAGGGCCTTTGGCTTTCACTAAAAGGGGGCCTCTCGGCACCCAG
ATTTTATTTTTGCAAAGTCCAAGTTTTGAGTCTCGCACGTGGATGGATTCGCCTAGCAGC
CATTCTGTGCCTGCCTCACAATATTTGGGGGCAGTAGTATATGCCTTGTTTCACCGGCGG
TGTAGCATTTGTGACACTTGCTCCCTGGCCTAGAACCATTCAGCCCACCCTGTATTTGCC
ATAAACCTCACAGTTCAGACCAAATTATCTGTCCTTGGGCCCAATCTCATATTTACATGG
GGGCCTCTTAAAATTCTTCTGTGGGCATAGAGCCTCAAGGAGTAAAAGAAGTTGCCAGTG
CTGGTCTTAGCATCTTCTGGGTAATGGCACAACCTTTCCCCTTCTGCTCTGGCCTCTTAG
TTTAGGAGGAAGACTTAGAAGTGAAGGCCTGGGGAGTTCTCTTGCGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               DCTN5_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               DCTN5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               357-476, + strand, RNAz p=0.506432

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-476, + strand, RNAz p=0.506432

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-770, gnl|bosTau2|chr3 (2718838-2719602)
               

               
               1-770, gnl|Hg17|chr1 (165069857-165070615)
               

               
               1-770, gnl|Mm7|chr6 (53009188-53009930)
               


               
               781-1719, gnl|bosTau2|chr3 (2719838-2720750)
               

               
               781-1719, gnl|Hg17|chr1 (165070624-165071567)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-770, gnl|bosTau2|chr3 (2718838-2719602)
               

               
               1-770, gnl|Hg17|chr1 (165069857-165070615)
               

               
               1-770, gnl|Mm7|chr6 (53009188-53009930)
               


               
               781-1719, gnl|bosTau2|chr3 (2719838-2720750)
               

               
               781-1719, gnl|Hg17|chr1 (165070624-165071567)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               elu (0.385356)
               

               
               cje (0.330469)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               cje (0.330469)
               

               
               tes (0.207814)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	1-770, gnl\|bosTau2\|chr3 (2718838-2719602)
	1-770, gnl\|Hg17\|chr1 (165069857-165070615)
	1-770, gnl\|Mm7\|chr6 (53009188-53009930)

	781-1719, gnl\|bosTau2\|chr3 (2719838-2720750)
	781-1719, gnl\|Hg17\|chr1 (165070624-165071567)

	elu (0.385356)
	cje (0.330469)
	tes (0.207814)
	fty (0.17584)
	nco (0.161734)
	hyp (0.142837)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	pgl (0.118483)
	spc (0.113366)
	cty (0.10408)