Non-Coding RNA Search

Ss1.1-Mixc-0027g09.5

Sequence:


               
               TTCTGTTAAAATACATCCTTAAAAAAATTTTTTCCTATGCATTGCCTATGCTTTAAATCA
ACAAACTCTTGATTTCTAAACTATGATCTCATATTTTTCTAATTTCTTTGCCAAAAATAA
TTGCCACGTTTTGTCATAGAACACAAAATCCATTTACTTTGATTTTTAAAAACAGACCAG
TGTAGAAGCTCTCAGTTTGACGTACAGCAGTGTAAAAGTTTAATGTACAGTGAAAGAGAC
TCTGAACAGACATAGATTTATCTTATTCCTTGAGCGCTAAAAACTTTAATGAAAAAAACT
GCACTAATTTTTTACAATGCACTAAAATCTGAGATTTCTCAGAACGTTTATTTATATATA
AAAATAAAATACCATTATTTAAATTGCCTTTGGGATTAACCCCTTCCCTTTCCTTATGTA
GCAGGAACTGTGCTGCTCAGTTTTTCTTTAGTAGTCCGTACTTCATGCCAGTACATTGGA
TGTTTCCTTTAAAATGCATACTTAATCTCAAGATACACATAGCTTCATCAGTGGCATTTC
CCGGAGCCAGTAGTCCGTGACTTGGTCCTGTGAACACTCCTGCCGGCCCCTGTGTCCACA
TTTCAGATGGGCTCCAGCGCTATATGTGCCCCGGCTCCTCTGCTGCTCCCCCTTGGGGCA
GGCAAGCTCTGCTGGAGTCAGTTCTGGGAAGAAAATACTTTTGCTTTTCAAAGAAGATGA
ACGTCCAGGAATTTAAAGAAAGGATTGATTGCCTTTTATGTTAAGAGTTCTTAGCTCTTG
AAGTTATTCACATGCAATTCAGTTAATCAAGTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCTGTTAAAATACATCCTTAAAAAAATTTTTTCCTATGCATTGCCTATGCTTTAAATCA
ACAAACTCTTGATTTCTAAACTATGATCTCATATTTTTCTAATTTCTTTGCCAAAAATAA
TTGCCACGTTTTGTCATAGAACACAAAATCCATTTACTTTGATTTTTAAAAACAGACCAG
TGTAGAAGCTCTCAGTTTGACGTACAGCAGTGTAAAAGTTTAATGTACAGTGAAAGAGAC
TCTGAACAGACATAGATTTATCTTATTCCTTGAGCGCTAAAAACTTTAATGAAAAAAACT
GCACTAATTTTTTACAATGCACTAAAATCTGAGATTTCTCAGAACGTTTATTTATATATA
AAAATAAAATACCATTATTTAAATTGCCTTTGGGATTAACCCCTTCCCTTTCCTTATGTA
GCAGGAACTGTGCTGCTCAGTTTTTCTTTAGTAGTCCGTACTTCATGCCAGTACATTGGA
TGTTTCCTTTAAAATGCATACTTAATCTCAAGATACACATAGCTTCATCAGTGGCATTTC
CCGGAGCCAGTAGTCCGTGACTTGGTCCTGTGAACACTCCTGCCGGCCCCTGTGTCCACA
TTTCAGATGGGCTCCAGCGCTATATGTGCCCCGGCTCCTCTGCTGCTCCCCCTTGGGGCA
GGCAAGCTCTGCTGGAGTCAGTTCTGGGAAGAAAATACTTTTGCTTTTCAAAGAAGATGA
ACGTCCAGGAATTTAAAGAAAGGATTGATTGCCTTTTATGTTAAGAGTTCTTAGCTCTTG
AAGTTATTCACATGCAATTCAGTTAATCAAGTAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               316-426, - strand, RNAz p=0.929618

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-426, - strand, RNAz p=0.929618

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-815, gnl|bosTau2|chr10 (58006627-58007437)
               

               
               1-815, gnl|Hg17|chr14 (70646659-70647460)
               

               
               1-815, gnl|Mm7|chr12 (79958237-79958963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-815, gnl|bosTau2|chr10 (58006627-58007437)
               

               
               1-815, gnl|Hg17|chr14 (70646659-70647460)
               

               
               1-815, gnl|Mm7|chr12 (79958237-79958963)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               tes (0.207814)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               tra (0.123092)

	1-815, gnl\|bosTau2\|chr10 (58006627-58007437)
	1-815, gnl\|Hg17\|chr14 (70646659-70647460)
	1-815, gnl\|Mm7\|chr12 (79958237-79958963)

	tes (0.207814)
	tbr (0.154178)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	ret (0.128733)
	sug (0.127291)
	ese (0.126502)
	tra (0.123092)