Non-Coding RNA Search

Ss1.1-Mixc-0027g15.5

Sequence:


               
               CACGAGGGGCCCTCCGTGTACCGCATCTTTAAACGGTGGCAGGCTGTCAACCAGCAGTGG
AAAGTGCTGAACTATGATAAGACGAAAGACTTGGAGGATCAAAAGGCAGGAGGAAGGACA
AACCCCCGGACCTCCTCGTCCACCCAGGCCAACGCCCCCTCCTCAGAAGAGGAGGCTGTG
GGCACCCCTGCCCCGGAGGAAGGCCCTGCTCGGGCGGCCAGCCACCCCTCAGGCCCTCTG
TCCGATCACCACTGTGCTTACACCATCCTGCACATCTTGAGTCACTTAAGACCTCATGAA
CAGCGGACGCCCCAGGGCGGCAGCAGAGAGTTGGTCATGAGGGTCACTACTGTGTGAAAG
GAGAGACCACGGAGGGAGACCGTGACCACGCACATGCGCACAAGAAAAAGGAGAAGATGG
GCTAGGAAGGGGCCGCCCCGACAGGACGCCGTCTGGGGGTCAGGTGTGGGGAGGGGAAGA
AGCACCCAGGGGCCAGGGCAGAGGGCAGGCAGAGGGCGGTGGGTTTCGAGGGGTCTTGGG
GCAGGATCGGAGCCGAAGTGAGTGAGACTGGTGCTGTGAATGGTTTGGTGATTTGCAGTC
AGTCAGTACCATTCTCCACCAATACAAACTCAAGGACGAAGTGCAATCCAGATGGAGCCT
AATGAAACACAAGACAGAAGCTCTCAGATGTGCCCATGCGCAGAACACCTGGGAGGCTGG
GGAGGACACAGCTGCGTGTCTGATGGTGGTGCCCATAGGTGCACGTGTGGCGGGGGAAAA
GAATGGCAATGGGCCTGGGAAGGAAAAGCACTTGTAGCCTGCCCTGATTTACCCTTGAGT
TTGCTTTGCTTTCCTCCTGGGCTATGTTCCAGGGGCAACTGGGGGGAGGGAGAGGGCTGG
ACATGGGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGAGGGGCCCTCCGTGTACCGCATCTTTAAACGGTGGCAGGCTGTCAACCAGCAGTGG
AAAGTGCTGAACTATGATAAGACGAAAGACTTGGAGGATCAAAAGGCAGGAGGAAGGACA
AACCCCCGGACCTCCTCGTCCACCCAGGCCAACGCCCCCTCCTCAGAAGAGGAGGCTGTG
GGCACCCCTGCCCCGGAGGAAGGCCCTGCTCGGGCGGCCAGCCACCCCTCAGGCCCTCTG
TCCGATCACCACTGTGCTTACACCATCCTGCACATCTTGAGTCACTTAAGACCTCATGAA
CAGCGGACGCCCCAGGGCGGCAGCAGAGAGTTGGTCATGAGGGTCACTACTGTGTGAAAG
GAGAGACCACGGAGGGAGACCGTGACCACGCACATGCGCACAAGAAAAAGGAGAAGATGG
GCTAGGAAGGGGCCGCCCCGACAGGACGCCGTCTGGGGGTCAGGTGTGGGGAGGGGAAGA
AGCACCCAGGGGCCAGGGCAGAGGGCAGGCAGAGGGCGGTGGGTTTCGAGGGGTCTTGGG
GCAGGATCGGAGCCGAAGTGAGTGAGACTGGTGCTGTGAATGGTTTGGTGATTTGCAGTC
AGTCAGTACCATTCTCCACCAATACAAACTCAAGGACGAAGTGCAATCCAGATGGAGCCT
AATGAAACACAAGACAGAAGCTCTCAGATGTGCCCATGCGCAGAACACCTGGGAGGCTGG
GGAGGACACAGCTGCGTGTCTGATGGTGGTGCCCATAGGTGCACGTGTGGCGGGGGAAAA
GAATGGCAATGGGCCTGGGAAGGAAAAGCACTTGTAGCCTGCCCTGATTTACCCTTGAGT
TTGCTTTGCTTTCCTCCTGGGCTATGTTCCAGGGGCAACTGGGGGGAGGGAGAGGGCTGG
ACATGGGCTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61871658|ref|XP_606088.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61871658|ref|XP_606088.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-320, - strand, RNAz p=0.872776

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-320, - strand, RNAz p=0.872776

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr2 (58864080-58863171)
               

               
               1-912, gnl|Hg17|chr2 (216949897-216949057)
               

               
               1-912, gnl|Mm7|chr1 (72670840-72670033)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr2 (58864080-58863171)
               

               
               1-912, gnl|Hg17|chr2 (216949897-216949057)
               

               
               1-912, gnl|Mm7|chr1 (72670840-72670033)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	1-912, gnl\|bosTau2\|chr2 (58864080-58863171)
	1-912, gnl\|Hg17\|chr2 (216949897-216949057)
	1-912, gnl\|Mm7\|chr1 (72670840-72670033)