Ss1.1-Mixc-0027g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCCCCGGTGGCTCCTGCGGGGCGGGGTGAAGGCCCAGCCGGCGGCTGCGCGCGTGCGC GGAAGAGAGCTGAGGGGCGGGGGCGCCGAGGCCGGCAGGGCTTGAGCGAGCTGAGACGAT GCAGGACCCCAACGCAGACACTGAGTGGAATGACATCTTACGGAAAAAGGGCATCTTGCC CTCAAAGGAGAGTTTGACAGAGCTGGAGAAGGAGGCGGAAGAGGAGGAGCAGCAGGCCCT TCAGCAGTCCATCGTGAAAACATATGAAGACATGACTTTGGAAGAACTGGAGGATAATGA AGACGAATTTAATGAGGAAGACGAACGTGCTATCGAAATGTACAGGCAGCAGAGACTGGC TGAGTGGAAAGCCACCCAAATGAAGAACAAATTTGGAGAGGTTTTGGAAATCTCAGGAAA GGATTATGTTCAAGAAGTTACCAAAGCTGGTGAGGGCTTGTGGGTCATTTTGCACCTTTA CAAACAAGGGATTCCCCTCTGTGCCCTGATAAATCAGCACTTCAGTGGGCTGGCCAGGAA GTTTCCTGATGTCAAATTTATCAAAGCCATTTCCACAACCTGCATACCCAATTATCCTGA TAGGAATCTGCCTACAATATTTGTTTACCTGGAAGGTGATATCAAGGCTCAGTTTATTGG ACCGCTGGTGTTTGGTGGCATGAACCTGACCATGGATGAGTTGGAGTGGAAACTGTCCGA GTCTGGAGCGATCAAGACGAGCCTGGAGGAGAACCCTAAGAAACCCATAGAAGACATGCT GCTTTCCTCGGTGCGTGGTTCCGGGCCTGCCAGGAGGGACAGCGATTCTGATGATGACTA AGGCTGCGGCCCTGGTAACTCGCTGAACTTTCTTGATAGGACAGATCATCTGAATTTTTT TAAAAGGGAAAACTAGTAGGAATTTATATTTTGGCTTTTAGCCTTTTATAATTATGTTTC AGAAAGAATCATTGCCAGGAATCCTATTAAACTTTTTGGAACTCTCTTTTTAAATTAGTA ATATTTCCTTTAAAAAAAAACAGCTATTGGTCTGGCAGGTGTCAATGTTGTTCCTCACTT ATATTTTAAGTGAGCTGTAAAACTTCAGTATTTGTTCCCATGTAAGTATAAAAAGAGAAA TATGAAGTTTTTTTTTAAAATAATAGAATAAATTGCACAGTGGAACAATTGCAAACTAAG CTTTGAATTTGTATATATTTTTTAAATTTTTTATAAAAGTAGCAAGGATTATTAACTCAA GTAAAAGGGATGATTGGAGTTTCTGCTGTGGCCTAGTGGGATTGGCAGCATCTTGGGAGA GCTGAGACACTAGTTCGATCCCTGGTCCGGTACAGTGGGTTAAGGATCCGGTGTTGCCTC AGGTGCAGCATAGGTCACAGCTGTGGCTCAGATCTGATCCCTGGCTGGGAAACTCCACGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCCCCGGTGGCTCCTGCGGGGCGGGGTGAAGGCCCAGCCGGCGGCTGCGCGCGTGCGC GGAAGAGAGCTGAGGGGCGGGGGCGCCGAGGCCGGCAGGGCTTGAGCGAGCTGAGACGAT GCAGGACCCCAACGCAGACACTGAGTGGAATGACATCTTACGGAAAAAGGGCATCTTGCC CTCAAAGGAGAGTTTGACAGAGCTGGAGAAGGAGGCGGAAGAGGAGGAGCAGCAGGCCCT TCAGCAGTCCATCGTGAAAACATATGAAGACATGACTTTGGAAGAACTGGAGGATAATGA AGACGAATTTAATGAGGAAGACGAACGTGCTATCGAAATGTACAGGCAGCAGAGACTGGC TGAGTGGAAAGCCACCCAAATGAAGAACAAATTTGGAGAGGTTTTGGAAATCTCAGGAAA GGATTATGTTCAAGAAGTTACCAAAGCTGGTGAGGGCTTGTGGGTCATTTTGCACCTTTA CAAACAAGGGATTCCCCTCTGTGCCCTGATAAATCAGCACTTCAGTGGGCTGGCCAGGAA GTTTCCTGATGTCAAATTTATCAAAGCCATTTCCACAACCTGCATACCCAATTATCCTGA TAGGAATCTGCCTACAATATTTGTTTACCTGGAAGGTGATATCAAGGCTCAGTTTATTGG ACCGCTGGTGTTTGGTGGCATGAACCTGACCATGGATGAGTTGGAGTGGAAACTGTCCGA GTCTGGAGCGATCAAGACGAGCCTGGAGGAGAACCCTAAGAAACCCATAGAAGACATGCT GCTTTCCTCGGTGCGTGGTTCCGGGCCTGCCAGGAGGGACAGCGATTCTGATGATGACTA AGGCTGCGGCCCTGGTAACTCGCTGAACTTTCTTGATAGGACAGATCATCTGAATTTTTT TAAAAGGGAAAACTAGTAGGAATTTATATTTTGGCTTTTAGCCTTTTATAATTATGTTTC AGAAAGAATCATTGCCAGGAATCCTATTAAACTTTTTGGAACTCTCTTTTTAAATTAGTA ATATTTCCTTTAAAAAAAAACAGCTATTGGTCTGGCAGGTGTCAATGTTGTTCCTCACTT ATATTTTAAGTGAGCTGTAAAACTTCAGTATTTGTTCCCATGTAAGTATAAAAAGAGAAA TATGAAGTTTTTTTTTAAAATAATAGAATAAATTGCACAGTGGAACAATTGCAAACTAAG CTTTGAATTTGTATATATTTTTTAAATTTTTTATAAAAGTAGCAAGGATTATTAACTCAA GTAAAAGGGATGATTGGAGTTTCTGCTGTGGCCTAGTGGGATTGGCAGCATCTTGGGAGA GCTGAGACACTAGTTCGATCCCTGGTCCGGTACAGTGGGTTAAGGATCCGGTGTTGCCTC AGGTGCAGCATAGGTCACAGCTGTGGCTCAGATCTGATCCCTGGCTGGGAAACTCCACGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | More info |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
| 123-252, gnl|bosTau2|chr11 (4378066-4377937) | |
| 123-252, gnl|canFam2|chr10 (45345231-45345100) | |
| 123-252, gnl|canFam2|chr10 (45345260-45345092) | |
| 123-252, gnl|canFam2|chr5 (53572182-53572044) | |
| 123-252, gnl|danRer3|chrNA (56260201-56260315) | |
| 123-252, gnl|danRer3|chrNA (56260313-56260183) | |
| 123-252, gnl|dasNov1|scaffold_19849 (9556-9679) | |
| 123-252, gnl|dasNov1|scaffold_19849 (9679-9543) | |
| 123-252, gnl|dasNov1|scaffold_19849 (9559-9672) | |
| 123-252, gnl|echTel1|scaffold_279370 (3703-3836) | |
| 123-252, gnl|echTel1|scaffold_279370 (3836-3688) | |
| 123-252, gnl|echTel1|scaffold_279370 (3706-3834) | |
| 123-252, gnl|fr1|chrUn (275014470-275014355) | |
| 123-252, gnl|fr1|chrUn (275014354-275014469) | |
| 123-252, gnl|fr1|chrUn (275014493-275014345) | |
| 123-252, gnl|galGal2|chr1 (126186327-126186456) | |
| 123-252, gnl|galGal2|chr1 (126186459-126186327) | |
| 123-252, gnl|galGal2|chr1 (126186329-126186468) | |
| 123-252, gnl|hg17|chr1 (52357541-52357660) | |
| 123-252, gnl|hg17|chr12 (64956566-64956711) | |
| 123-252, gnl|hg17|chr2 (100641452-100641617) | |
| 123-252, gnl|Hg17|chr2 (100641481-100641607) | |
| 123-252, gnl|mm7|chr1 (39232756-39232626) | |
| 123-252, gnl|mm7|chr1 (39232596-39232764) | |
| 123-252, gnl|Mm7|chr1 (39232625-39232754) | |
| 123-252, gnl|mm7|chr3 (104212266-104212182) | |
| 123-252, gnl|monDom2|scaffold_11 (17097224-17097395) | |
| 123-252, gnl|monDom2|scaffold_66 (953440-953304) | |
| 123-252, gnl|monDom2|scaffold_66 (953304-953452) | |
| 123-252, gnl|oryCun1|scaffold_173939 (91381-91512) | |
| 123-252, gnl|oryCun1|scaffold_173939 (91513-91380) | |
| 123-252, gnl|oryCun1|scaffold_173939 (91363-91521) | |
| 123-252, gnl|panTro1|chr1 (50576688-50576807) | |
| 123-252, gnl|panTro1|chr10 (66412059-66412203) | |
| 123-252, gnl|panTro1|chr12 (103531876-103532041) | |
| 123-252, gnl|rheMac2|chr1 (55009310-55009440) | |
| 123-252, gnl|rheMac2|chr13 (100500984-100501149) | |
| 123-252, gnl|rheMac2|chr8 (104383334-104383477) | |
| 123-252, gnl|rn3|chr9 (38008982-38009112) | |
| 123-252, gnl|rn3|chr9 (38009113-38008983) | |
| 123-252, gnl|rn3|chr9 (38008970-38009121) | |
| 123-252, gnl|tetNig1|chr2 (17980884-17980769) | |
| 123-252, gnl|tetNig1|chr2 (17980775-17980883) | |
| 123-252, gnl|tetNig1|chr2 (17980889-17980757) | |
| 123-252, gnl|xenTro1|scaffold_85 (1017605-1017482) | |
| 123-252, gnl|xenTro1|scaffold_85 (1017482-1017601) | |
| 123-252, gnl|xenTro1|scaffold_85 (1017602-1017469) | |
| 340-490, gnl|bosTau2|chr11 (4374548-4374398) | |
| 340-490, gnl|canFam2|chr10 (45342657-45342516) | |
| 340-490, gnl|canFam2|chr10 (45342687-45342513) | |
| 340-490, gnl|canFam2|chr5 (53572418-53572272) | |
| 340-490, gnl|dasNov1|scaffold_155596 (3534-3364) | |
| 340-490, gnl|dasNov1|scaffold_19849 (9769-9914) | |
| 340-490, gnl|dasNov1|scaffold_19849 (9915-9769) | |
| 340-490, gnl|echTel1|scaffold_279370 (3926-4071) | |
| 340-490, gnl|echTel1|scaffold_279370 (4072-3926) | |
| 340-490, gnl|echTel1|scaffold_279370 (3930-4073) | |
| 340-490, gnl|fr1|chrUn (275013674-275013529) | |
| 340-490, gnl|fr1|chrUn (275013529-275013674) | |
| 340-490, gnl|fr1|chrUn (275013681-275013526) | |
| 340-490, gnl|galGal2|chr1 (126187964-126188109) | |
| 340-490, gnl|galGal2|chr1 (126188110-126187966) | |
| 340-490, gnl|galGal2|chr1 (126187942-126188111) | |
| 340-490, gnl|hg17|chr1 (52357750-52357895) | |
| 340-490, gnl|hg17|chr2 (100644534-100644704) | |
| 340-490, gnl|Hg17|chr2 (100644554-100644702) | |
| 340-490, gnl|hg17|chr3 (17894300-17894446) | |
| 340-490, gnl|mm7|chr1 (39236605-39236772) | |
| 340-490, gnl|Mm7|chr1 (39236620-39236770) | |
| 340-490, gnl|mm7|chr3 (104212092-104211952) | |
| 340-490, gnl|mm7|chr3 (104211951-104212092) | |
| 340-490, gnl|monDom2|scaffold_11 (17101352-17101207) | |
| 340-490, gnl|monDom2|scaffold_11 (17101184-17101354) | |
| 340-490, gnl|monDom2|scaffold_66 (953214-953069) | |
| 340-490, gnl|oryCun1|scaffold_173939 (95240-95385) | |
| 340-490, gnl|oryCun1|scaffold_173939 (95386-95240) | |
| 340-490, gnl|oryCun1|scaffold_173939 (95219-95388) | |
| 340-490, gnl|panTro1|chr1 (50576897-50577042) | |
| 340-490, gnl|panTro1|chr12 (103534829-103534999) | |
| 340-490, gnl|panTro1|chr2 (18586177-18586323) | |
| 340-490, gnl|rheMac2|chr1 (55009530-55009675) | |
| 340-490, gnl|rheMac2|chr13 (100504052-100504222) | |
| 340-490, gnl|rheMac2|chr2 (160157669-160157815) | |
| 340-490, gnl|rn3|chr9 (38011610-38011755) | |
| 340-490, gnl|rn3|chr9 (38011756-38011611) | |
| 340-490, gnl|rn3|chr9 (38011592-38011758) | |
| 340-490, gnl|tetNig1|chr2 (17980358-17980213) | |
| 340-490, gnl|tetNig1|chr2 (17980213-17980356) | |
| 340-490, gnl|tetNig1|chr2 (17980365-17980210) | |
| 340-490, gnl|xenTro1|scaffold_85 (1015193-1015049) | |
| 340-490, gnl|xenTro1|scaffold_85 (1015048-1015191) | |
| 340-490, gnl|xenTro1|scaffold_85 (1015219-1015046) | |
| 691-1260, gnl|bosTau2|chr11 (4370830-4370233) | |
| 691-1260, gnl|Hg17|chr2 (100651327-100651903) | |
| 691-1260, gnl|Mm7|chr1 (39237516-39238109) |
| Aligned organism(s): 95 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 123-252, gnl|bosTau2|chr11 (4378066-4377937) | |
| 123-252, gnl|canFam2|chr10 (45345231-45345100) | |
| 123-252, gnl|canFam2|chr10 (45345260-45345092) | |
| 123-252, gnl|canFam2|chr5 (53572182-53572044) | |
| 123-252, gnl|danRer3|chrNA (56260201-56260315) | |
| 123-252, gnl|danRer3|chrNA (56260313-56260183) | |
| 123-252, gnl|dasNov1|scaffold_19849 (9556-9679) | |
| 123-252, gnl|dasNov1|scaffold_19849 (9679-9543) | |
| 123-252, gnl|dasNov1|scaffold_19849 (9559-9672) | |
| 123-252, gnl|echTel1|scaffold_279370 (3703-3836) | |
| 123-252, gnl|echTel1|scaffold_279370 (3836-3688) | |
| 123-252, gnl|echTel1|scaffold_279370 (3706-3834) | |
| 123-252, gnl|fr1|chrUn (275014470-275014355) | |
| 123-252, gnl|fr1|chrUn (275014354-275014469) | |
| 123-252, gnl|fr1|chrUn (275014493-275014345) | |
| 123-252, gnl|galGal2|chr1 (126186327-126186456) | |
| 123-252, gnl|galGal2|chr1 (126186459-126186327) | |
| 123-252, gnl|galGal2|chr1 (126186329-126186468) | |
| 123-252, gnl|hg17|chr1 (52357541-52357660) | |
| 123-252, gnl|hg17|chr12 (64956566-64956711) | |
| 123-252, gnl|hg17|chr2 (100641452-100641617) | |
| 123-252, gnl|Hg17|chr2 (100641481-100641607) | |
| 123-252, gnl|mm7|chr1 (39232756-39232626) | |
| 123-252, gnl|mm7|chr1 (39232596-39232764) | |
| 123-252, gnl|Mm7|chr1 (39232625-39232754) | |
| 123-252, gnl|mm7|chr3 (104212266-104212182) | |
| 123-252, gnl|monDom2|scaffold_11 (17097224-17097395) | |
| 123-252, gnl|monDom2|scaffold_66 (953440-953304) | |
| 123-252, gnl|monDom2|scaffold_66 (953304-953452) | |
| 123-252, gnl|oryCun1|scaffold_173939 (91381-91512) | |
| 123-252, gnl|oryCun1|scaffold_173939 (91513-91380) | |
| 123-252, gnl|oryCun1|scaffold_173939 (91363-91521) | |
| 123-252, gnl|panTro1|chr1 (50576688-50576807) | |
| 123-252, gnl|panTro1|chr10 (66412059-66412203) | |
| 123-252, gnl|panTro1|chr12 (103531876-103532041) | |
| 123-252, gnl|rheMac2|chr1 (55009310-55009440) | |
| 123-252, gnl|rheMac2|chr13 (100500984-100501149) | |
| 123-252, gnl|rheMac2|chr8 (104383334-104383477) | |
| 123-252, gnl|rn3|chr9 (38008982-38009112) | |
| 123-252, gnl|rn3|chr9 (38009113-38008983) | |
| 123-252, gnl|rn3|chr9 (38008970-38009121) | |
| 123-252, gnl|tetNig1|chr2 (17980884-17980769) | |
| 123-252, gnl|tetNig1|chr2 (17980775-17980883) | |
| 123-252, gnl|tetNig1|chr2 (17980889-17980757) | |
| 123-252, gnl|xenTro1|scaffold_85 (1017605-1017482) | |
| 123-252, gnl|xenTro1|scaffold_85 (1017482-1017601) | |
| 123-252, gnl|xenTro1|scaffold_85 (1017602-1017469) | |
| 340-490, gnl|bosTau2|chr11 (4374548-4374398) | |
| 340-490, gnl|canFam2|chr10 (45342657-45342516) | |
| 340-490, gnl|canFam2|chr10 (45342687-45342513) | |
| 340-490, gnl|canFam2|chr5 (53572418-53572272) | |
| 340-490, gnl|dasNov1|scaffold_155596 (3534-3364) | |
| 340-490, gnl|dasNov1|scaffold_19849 (9769-9914) | |
| 340-490, gnl|dasNov1|scaffold_19849 (9915-9769) | |
| 340-490, gnl|echTel1|scaffold_279370 (3926-4071) | |
| 340-490, gnl|echTel1|scaffold_279370 (4072-3926) | |
| 340-490, gnl|echTel1|scaffold_279370 (3930-4073) | |
| 340-490, gnl|fr1|chrUn (275013674-275013529) | |
| 340-490, gnl|fr1|chrUn (275013529-275013674) | |
| 340-490, gnl|fr1|chrUn (275013681-275013526) | |
| 340-490, gnl|galGal2|chr1 (126187964-126188109) | |
| 340-490, gnl|galGal2|chr1 (126188110-126187966) | |
| 340-490, gnl|galGal2|chr1 (126187942-126188111) | |
| 340-490, gnl|hg17|chr1 (52357750-52357895) | |
| 340-490, gnl|hg17|chr2 (100644534-100644704) | |
| 340-490, gnl|Hg17|chr2 (100644554-100644702) | |
| 340-490, gnl|hg17|chr3 (17894300-17894446) | |
| 340-490, gnl|mm7|chr1 (39236605-39236772) | |
| 340-490, gnl|Mm7|chr1 (39236620-39236770) | |
| 340-490, gnl|mm7|chr3 (104212092-104211952) | |
| 340-490, gnl|mm7|chr3 (104211951-104212092) | |
| 340-490, gnl|monDom2|scaffold_11 (17101352-17101207) | |
| 340-490, gnl|monDom2|scaffold_11 (17101184-17101354) | |
| 340-490, gnl|monDom2|scaffold_66 (953214-953069) | |
| 340-490, gnl|oryCun1|scaffold_173939 (95240-95385) | |
| 340-490, gnl|oryCun1|scaffold_173939 (95386-95240) | |
| 340-490, gnl|oryCun1|scaffold_173939 (95219-95388) | |
| 340-490, gnl|panTro1|chr1 (50576897-50577042) | |
| 340-490, gnl|panTro1|chr12 (103534829-103534999) | |
| 340-490, gnl|panTro1|chr2 (18586177-18586323) | |
| 340-490, gnl|rheMac2|chr1 (55009530-55009675) | |
| 340-490, gnl|rheMac2|chr13 (100504052-100504222) | |
| 340-490, gnl|rheMac2|chr2 (160157669-160157815) | |
| 340-490, gnl|rn3|chr9 (38011610-38011755) | |
| 340-490, gnl|rn3|chr9 (38011756-38011611) | |
| 340-490, gnl|rn3|chr9 (38011592-38011758) | |
| 340-490, gnl|tetNig1|chr2 (17980358-17980213) | |
| 340-490, gnl|tetNig1|chr2 (17980213-17980356) | |
| 340-490, gnl|tetNig1|chr2 (17980365-17980210) | |
| 340-490, gnl|xenTro1|scaffold_85 (1015193-1015049) | |
| 340-490, gnl|xenTro1|scaffold_85 (1015048-1015191) | |
| 340-490, gnl|xenTro1|scaffold_85 (1015219-1015046) | |
| 691-1260, gnl|bosTau2|chr11 (4370830-4370233) | |
| 691-1260, gnl|Hg17|chr2 (100651327-100651903) | |
| 691-1260, gnl|Mm7|chr1 (39237516-39238109) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| pla (0.534688) | |
| pro (0.512033) | |
| hea (0.408998) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| eep (0.245128) | |
| col (0.195008) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nco (0.161734) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.534688) | |
| pro (0.512033) | |
| hea (0.408998) | |
| tbr (0.308356) | |
| cte (0.29274) | |
| eep (0.245128) | |
| col (0.195008) | |
| ldo (0.194005) | |
| mcp (0.170648) | |
| cut (0.169924) | |
| nco (0.161734) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| sug (0.127291) | |
| thg (0.126791) | |
| bla (0.124347) | |
| clu (0.119646) | |
| ecc (0.115035) | |
| eje (0.0988338) |