Non-Coding RNA Search

Ss1.1-Mixc-0027h15.5

Sequence:


               
               TATATATTTATTGTCTGGGAGGCAGAACAGGCTTCTGATGGCGCCTGGGCTGGGAATGGG
TTAGGGTGGCTTTTTTTCTTCCTTTCTTTCTTGACATGTGAAGAAGAGGAGCAAGGTGGA
TGAGCTGGGACGCCTGAGCTTTTCTCCCCCTTGACATGCACCGCCTGAGAGACTTAGGGA
CTGATGGATGGAGGGATACAGAAGGAGAGGGTTAGGGGCTCTGAACACAGCAGGGCAGGT
GATGCCCACAGGGTCCCCGGGGAGTTCCCGAGCCCCACACTCAGGACTGAATGTGTTTAC
CTCTGCCTGGTGAACCTGCTGGGGCGGCCAGAGTTGGCTTTTGCTCTGCTACCCCCAGGT
CAGGATCAGATGAGGGTTTCCAAGCTGGGTTTGCCCTCTCCATAAGCCAGGGAGGGGCCT
CTGGCAATGGCTGAATCTAGCCTTCTTGGGGGCTGCACCCACTGAGACCCATTCATTCAC
CAAAACCCCAGCCACAACCCCAGGGAAAGCTCAAGCCGCTCGTCGCTCTTAATATGTATT
AAGTGCCTGAGACCCCGTTACCTTGTGCGTCAAGACAAGCAGCTCCGACCTCTAACTGTG
TCCTTCCATCCGGGTGTGGGTGTCTGGACCCCAGCCCCGCCTCTTGCACTTTTCAGTTCA
GGGTTATACACTGTGTAAAGTCCACATTCTATTATTTTGCACTGCTTTCCGTTCTGGTTG
GGACGGGCTCCTAGGCCAGAGAGGCTCCGGGCGGATGACGGTGCAGACCCAGCCTCTCTC
CGAGGGCATAATGAGAGGTGCATGCAGAGGAAAGGGGCAGCTTGACCATGATTTCAAAGT
CAAGATCTCAACTATGTATCCCCCAAACATTTCCACTTCTGTGCCCCTGAGCCATCCACT
TCCCCGACAAGCTGGTCCATGATGAAATGTGCTTGTTGGTCCGCCCTGTAAGACTTGCTC
TAGGCTCAGGCATTTGAGGGGACCTATTAAAGAAGAATGCTTCCTGAAATTGCCACACAT
GTCGTGGCATTTAGAACCCCTGTGCTGGGGGACGGCCTCTAAGGGGGTTAACTTTCATTG
CACAACGGAGGAACGTGGTGCCCCACTCTGCAGGAGACTGTGAATGCCTTTTCTCTTTCT
GAAGCATGTAAATAACCCCCATGCAGACAGTGGGGGCTTTTTGTTATGTTTGCACTTTGT
ATATTTGTTGAAACACTTACTTGCCTATATATATGAAAAAGATCTATTTATTTTTGCAAA
CCCTGGTTGCTGCATTGGGGGGAACTGTCTCTGAGACGCCTTATCTTTCTGTACAAAGAT
TATTTGCGTGCTGTGCGCAATGCTCTTCAGGAGAATCAGGTCTGGGTTGTATATATGGGT
TGCTTTGTGGGGAGGGTATTGGGTTTTAAACCACTGTATAAAGAATGTTTTTATAGCCTA
CACGTCTTACTGTGATCAGTTAAATTTCTTAAATAAAGTATTTGGTTAAATGTGAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATATTTATTGTCTGGGAGGCAGAACAGGCTTCTGATGGCGCCTGGGCTGGGAATGGG
TTAGGGTGGCTTTTTTTCTTCCTTTCTTTCTTGACATGTGAAGAAGAGGAGCAAGGTGGA
TGAGCTGGGACGCCTGAGCTTTTCTCCCCCTTGACATGCACCGCCTGAGAGACTTAGGGA
CTGATGGATGGAGGGATACAGAAGGAGAGGGTTAGGGGCTCTGAACACAGCAGGGCAGGT
GATGCCCACAGGGTCCCCGGGGAGTTCCCGAGCCCCACACTCAGGACTGAATGTGTTTAC
CTCTGCCTGGTGAACCTGCTGGGGCGGCCAGAGTTGGCTTTTGCTCTGCTACCCCCAGGT
CAGGATCAGATGAGGGTTTCCAAGCTGGGTTTGCCCTCTCCATAAGCCAGGGAGGGGCCT
CTGGCAATGGCTGAATCTAGCCTTCTTGGGGGCTGCACCCACTGAGACCCATTCATTCAC
CAAAACCCCAGCCACAACCCCAGGGAAAGCTCAAGCCGCTCGTCGCTCTTAATATGTATT
AAGTGCCTGAGACCCCGTTACCTTGTGCGTCAAGACAAGCAGCTCCGACCTCTAACTGTG
TCCTTCCATCCGGGTGTGGGTGTCTGGACCCCAGCCCCGCCTCTTGCACTTTTCAGTTCA
GGGTTATACACTGTGTAAAGTCCACATTCTATTATTTTGCACTGCTTTCCGTTCTGGTTG
GGACGGGCTCCTAGGCCAGAGAGGCTCCGGGCGGATGACGGTGCAGACCCAGCCTCTCTC
CGAGGGCATAATGAGAGGTGCATGCAGAGGAAAGGGGCAGCTTGACCATGATTTCAAAGT
CAAGATCTCAACTATGTATCCCCCAAACATTTCCACTTCTGTGCCCCTGAGCCATCCACT
TCCCCGACAAGCTGGTCCATGATGAAATGTGCTTGTTGGTCCGCCCTGTAAGACTTGCTC
TAGGCTCAGGCATTTGAGGGGACCTATTAAAGAAGAATGCTTCCTGAAATTGCCACACAT
GTCGTGGCATTTAGAACCCCTGTGCTGGGGGACGGCCTCTAAGGGGGTTAACTTTCATTG
CACAACGGAGGAACGTGGTGCCCCACTCTGCAGGAGACTGTGAATGCCTTTTCTCTTTCT
GAAGCATGTAAATAACCCCCATGCAGACAGTGGGGGCTTTTTGTTATGTTTGCACTTTGT
ATATTTGTTGAAACACTTACTTGCCTATATATATGAAAAAGATCTATTTATTTTTGCAAA
CCCTGGTTGCTGCATTGGGGGGAACTGTCTCTGAGACGCCTTATCTTTCTGTACAAAGAT
TATTTGCGTGCTGTGCGCAATGCTCTTCAGGAGAATCAGGTCTGGGTTGTATATATGGGT
TGCTTTGTGGGGAGGGTATTGGGTTTTAAACCACTGTATAAAGAATGTTTTTATAGCCTA
CACGTCTTACTGTGATCAGTTAAATTTCTTAAATAAAGTATTTGGTTAAATGTGAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               1-1051, gnl|bosTau2|chr7 (11037172-11038254)
               

               
               1-1051, gnl|Hg17|chr19 (11103102-11104116)
               


               
               1058-1496, gnl|bosTau2|chr7 (11038287-11038721)
               

               
               1058-1496, gnl|Hg17|chr19 (11105019-11105512)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1051, gnl|bosTau2|chr7 (11037172-11038254)
               

               
               1-1051, gnl|Hg17|chr19 (11103102-11104116)
               


               
               1058-1496, gnl|bosTau2|chr7 (11038287-11038721)
               

               
               1058-1496, gnl|Hg17|chr19 (11105019-11105512)

Expressed library(ies): 13 entry(ies)

More info

Expressed library(ies): 13 entry(ies)

Help | Less info


               
               cov (1.32153)
               

               
               cag (0.907167)
               

               
               cte (0.29274)
               

               
               cbr (0.255951)
               

               
               fli (0.202881)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (1.32153)
               

               
               cag (0.907167)
               

               
               cte (0.29274)
               

               
               cbr (0.255951)
               

               
               fli (0.202881)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               eje (0.0988338)

	1-1051, gnl\|bosTau2\|chr7 (11037172-11038254)
	1-1051, gnl\|Hg17\|chr19 (11103102-11104116)

	1058-1496, gnl\|bosTau2\|chr7 (11038287-11038721)
	1058-1496, gnl\|Hg17\|chr19 (11105019-11105512)

	cov (1.32153)
	cag (0.907167)
	cte (0.29274)
	cbr (0.255951)
	fli (0.202881)
	fbs (0.175346)
	eye (0.170503)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	pty (0.142714)
	lnt (0.142308)
	eje (0.0988338)