Non-Coding RNA Search

Ss1.1-Mixc-0027i05.3

Sequence:


               
               TTTGTTTTAGGGACCAATCCTAACATGGGTAAGTCTAGTGTCTTTCACCAAATAGACTCC
TACTGTTTCATCACACTCACTTTTTAAGGAGACCTATTTAGACTTTTTGCTCTAATCAAG
CTAATCTGCTTAACTGGACATGACATATTTGCTTCCAAGTCTCTGCCTTTGCACACTCCC
TACTCTCCACTGACATTATACTCAAGTCACATTTTTTTTTTCTCCTGACATAGGGACTTC
TGAACAATTATTGACACAGTACCCCTTGGCTTTCATATGTTTATTCATATGTGTATTTAT
TTGTATTTATGTTACTTTGTAAATATATTTTATAGTTGCTTTGTGTGTGGAACCTTTCTC
CCCATATAGGTTGTAAGCTCCTTGAGAGCAGGAACCATGTTATCCCTTTATTTTTGTAAA
CCACTTGCTCCACCATTTCTTCACAGTGCCTAGTGCTACTCATTGCTACTCATGTGATGT
TGAATTTGACTGACATACTTAAAGACTTGGAACAGGTTTATTTTAGGCTGCAAAGGAAAC
AAAAGGCCTTAGAGTCATCTCTTTGTAATTCTCTCTCAGCCTCTTCCATCTGCTTACTCT
AGATTCTATCTTGCTTTTCTTCCTCTCCTCTCTCTCCTTTCCCTGGCTCTTTGCCTCCAT
TTCACGCAGCATACAACAAGGTTGCCAGCTACCAAGCAGTCAAATAAGTGGGTACTTCTC
TAGCCATTTTCCCTTTCAAGAGCATATAATACTAGTCAACTTTGCCTTTGCTTTATTCAT
CATGCAGCCCTCTGGGTCAGTTGCTGTATCATTTTGCCTTGATGCCCCATTCTCTTCTAC
AGCACTAAGGTCTTGTGAATTTCTCTCTCTCTTTTTTTGGGGGGGGAGGTGTTGATTAAT
TGTTTCATTGTTATTAAATATATGCATGTATCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTAGGGACCAATCCTAACATGGGTAAGTCTAGTGTCTTTCACCAAATAGACTCC
TACTGTTTCATCACACTCACTTTTTAAGGAGACCTATTTAGACTTTTTGCTCTAATCAAG
CTAATCTGCTTAACTGGACATGACATATTTGCTTCCAAGTCTCTGCCTTTGCACACTCCC
TACTCTCCACTGACATTATACTCAAGTCACATTTTTTTTTTCTCCTGACATAGGGACTTC
TGAACAATTATTGACACAGTACCCCTTGGCTTTCATATGTTTATTCATATGTGTATTTAT
TTGTATTTATGTTACTTTGTAAATATATTTTATAGTTGCTTTGTGTGTGGAACCTTTCTC
CCCATATAGGTTGTAAGCTCCTTGAGAGCAGGAACCATGTTATCCCTTTATTTTTGTAAA
CCACTTGCTCCACCATTTCTTCACAGTGCCTAGTGCTACTCATTGCTACTCATGTGATGT
TGAATTTGACTGACATACTTAAAGACTTGGAACAGGTTTATTTTAGGCTGCAAAGGAAAC
AAAAGGCCTTAGAGTCATCTCTTTGTAATTCTCTCTCAGCCTCTTCCATCTGCTTACTCT
AGATTCTATCTTGCTTTTCTTCCTCTCCTCTCTCTCCTTTCCCTGGCTCTTTGCCTCCAT
TTCACGCAGCATACAACAAGGTTGCCAGCTACCAAGCAGTCAAATAAGTGGGTACTTCTC
TAGCCATTTTCCCTTTCAAGAGCATATAATACTAGTCAACTTTGCCTTTGCTTTATTCAT
CATGCAGCCCTCTGGGTCAGTTGCTGTATCATTTTGCCTTGATGCCCCATTCTCTTCTAC
AGCACTAAGGTCTTGTGAATTTCTCTCTCTCTTTTTTTGGGGGGGGAGGTGTTGATTAAT
TGTTTCATTGTTATTAAATATATGCATGTATCCAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               631-750, + strand, RNAz p=0.688648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               631-750, + strand, RNAz p=0.688648

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032846, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032846, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-936, gnl|bosTau2|chr10 (16018374-16017475)
               

               
               1-936, gnl|Hg17|chr14 (20997943-20997022)
               

               
               1-936, gnl|Mm7|chr14 (47596516-47595448)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-936, gnl|bosTau2|chr10 (16018374-16017475)
               

               
               1-936, gnl|Hg17|chr14 (20997943-20997022)
               

               
               1-936, gnl|Mm7|chr14 (47596516-47595448)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fcc (0.197785)
               

               
               rec (0.17307)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lyg (0.133103)
               

               
               bla (0.124347)

	1-936, gnl\|bosTau2\|chr10 (16018374-16017475)
	1-936, gnl\|Hg17\|chr14 (20997943-20997022)
	1-936, gnl\|Mm7\|chr14 (47596516-47595448)

	amn (0.417711)
	fcc (0.197785)
	rec (0.17307)
	csp (0.161186)
	cag (0.151194)
	fat (0.147427)
	ski (0.146735)
	lyg (0.133103)
	bla (0.124347)