Non-Coding RNA Search

Ss1.1-Mixc-0027k03.3

Sequence:


               
               AAGTTTGGGATTTGCTTCTTTTCAAACATTCCAGAGTAAAATTGAGGAAACTTCTATTTC
TCAGGAAAAAACATTAATAAATAAGAGCTTGGATTTTATTGCCTTTGCCCACTCTCCTGA
TATTGTCCTTTCCTTCTTTAAAAACAACCCAGAGATAGATCCCTTCCCAAAATACGTACT
GATCTCAGCAGTGAAATAAAGGAACTCTTTTTGAATCTTCCCATCTAAGGACTCATAAAA
ACAGGGCTAGAGGACAGTGACCTAAAACCAGACAAATTCAGGCCTCCCAGTCCCCATCAC
AGTTTCTCCATCCCTACAAGCACACTTATGGCTCAAAAAGAATTAATGCCCAAAGCGCCG
GTGAGGCACATAGACATGGAAAATTTTTCTGTCCTGGTTATACCAGGCGTCAGATAACAT
ATTGTTACATCTTCAATGGACCATTCATTTAGAAAGGGTTCTAACCTTTTTAAATCACAA
ACTAACAACAACAGTATGTCAGGGATCTTGGACCACACTCATCATAGCTTCTTTGTCGAG
TAAGCAGAGAGGTTGTATTACTTGGTTGCCTGGAAATTCATATCTGTTCCACTGATCTGC
AAAGATCTTGGATCCCTACTAAAGGCTGTGGATCTCCACATAAATGATATCTCTGTTACA
GAGAAAGAAGGGGCTACTGCACGTGCTAGAATGTCTTCGACTTTGTATCAGATGCTCCAA
GTTTGGTTTCAACCAGGCTTCCAGTGTGCCCAACGCCAATCTTCATGCTTTAGCAAGGAC
AGAAAAGTCTGGACCCCAGGAGCACCCCAGACCTCTCAGAAAAAAGAGCAGAAGCATGCT
TCCTTTGGACTAAATTTGGTCCCCTTGGTTAGCACCAATCTCTCATTTAGTTCTTCACGG
ACTAAATTACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTTGGGATTTGCTTCTTTTCAAACATTCCAGAGTAAAATTGAGGAAACTTCTATTTC
TCAGGAAAAAACATTAATAAATAAGAGCTTGGATTTTATTGCCTTTGCCCACTCTCCTGA
TATTGTCCTTTCCTTCTTTAAAAACAACCCAGAGATAGATCCCTTCCCAAAATACGTACT
GATCTCAGCAGTGAAATAAAGGAACTCTTTTTGAATCTTCCCATCTAAGGACTCATAAAA
ACAGGGCTAGAGGACAGTGACCTAAAACCAGACAAATTCAGGCCTCCCAGTCCCCATCAC
AGTTTCTCCATCCCTACAAGCACACTTATGGCTCAAAAAGAATTAATGCCCAAAGCGCCG
GTGAGGCACATAGACATGGAAAATTTTTCTGTCCTGGTTATACCAGGCGTCAGATAACAT
ATTGTTACATCTTCAATGGACCATTCATTTAGAAAGGGTTCTAACCTTTTTAAATCACAA
ACTAACAACAACAGTATGTCAGGGATCTTGGACCACACTCATCATAGCTTCTTTGTCGAG
TAAGCAGAGAGGTTGTATTACTTGGTTGCCTGGAAATTCATATCTGTTCCACTGATCTGC
AAAGATCTTGGATCCCTACTAAAGGCTGTGGATCTCCACATAAATGATATCTCTGTTACA
GAGAAAGAAGGGGCTACTGCACGTGCTAGAATGTCTTCGACTTTGTATCAGATGCTCCAA
GTTTGGTTTCAACCAGGCTTCCAGTGTGCCCAACGCCAATCTTCATGCTTTAGCAAGGAC
AGAAAAGTCTGGACCCCAGGAGCACCCCAGACCTCTCAGAAAAAAGAGCAGAAGCATGCT
TCCTTTGGACTAAATTTGGTCCCCTTGGTTAGCACCAATCTCTCATTTAGTTCTTCACGG
ACTAAATTACAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               615-733, + strand, RNAz p=0.622374

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               615-733, + strand, RNAz p=0.622374

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-912, gnl|bosTau2|chr26 (11599159-11598260)
               

               
               1-912, gnl|Hg17|chr10 (101455504-101454610)
               

               
               1-912, gnl|Mm7|chr19 (43625077-43623981)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr26 (11599159-11598260)
               

               
               1-912, gnl|Hg17|chr10 (101455504-101454610)
               

               
               1-912, gnl|Mm7|chr19 (43625077-43623981)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.182715)
               

               
               csk (0.140746)
               

               
               ret (0.128733)

	1-912, gnl\|bosTau2\|chr26 (11599159-11598260)
	1-912, gnl\|Hg17\|chr10 (101455504-101454610)
	1-912, gnl\|Mm7\|chr19 (43625077-43623981)