Ss1.1-Mixc-0027l04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCGGCCGAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGTCT CTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTCGC TGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCTCCCACCTCCTGCTG CTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACCAG CAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGCGC CAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCTGC TCTGAACCCGGGGAAGGTGTCCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGCAA GACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCGCTATTCCTTTTCCTAACTTA ATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGCTTTTTT TTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCATCACTATTTCTCTGC TATTGTAGATACACGGATAATGCCCTCGATTCCAAGTGTTTTCATAATACCCTTTAAAAA ATAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCGGCCGAGGAGGGTTCTGAAGCTTCTGGGTCCTCTCCTCTGAGCTCCGGGCAAGTCT CTCCTCCGCCAAGACCATGAAGCTCTGCGTGACTGTCCTCTCCCTCCTGGTCCTGGTCGC TGCCTTCTGCTCTCCAGCGCTCTCAGCACCAATGGGCTCAGACCCTCCCACCTCCTGCTG CTTCACATACACCGTGCGGAAGCTTCCTCGCAACTTCGTGACTGATTACTATGAGACCAG CAGCCTCTGCTCCCAGCCAGCCGTGGTATTCCAGACCAAAAAGGGCAGGCAGGTCTGCGC CAACCCCAGTGATGACTGGGTCCAGGAGTACATGGATGACCTGGAACTGAACTGAGCTGC TCTGAACCCGGGGAAGGTGTCCTCCAGGGAAAGTCACCTGAGCCCGACGCTTCTCAGCAA GACGCACCTTCTCGAGACTCCTGACTCCGCTCAGTAGTCGCTATTCCTTTTCCTAACTTA ATCTGTATTACATGCTGTGTTGCTGTATTTGGTGTTCTTTCCCCTTATTTATGCTTTTTT TTTTTTAACCCAAGGACATTTGTCCCCCATGGGGATGGTCCACCATCACTATTTCTCTGC TATTGTAGATACACGGATAATGCCCTCGATTCCAAGTGTTTTCATAATACCCTTTAAAAA ATAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 499-649, + strand, RNAz p=0.995371 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 499-649, + strand, RNAz p=0.995371 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_002984, + |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 5-152, gnl|bosTau2|chr19 (6519826-6519679) | |
| 5-152, gnl|canFam2|chr9 (41003278-41002882) | |
| 5-152, gnl|canFam2|chr9 (41003278-41002934) | |
| 5-152, gnl|dasNov1|scaffold_62130 (6503-6115) | |
| 5-152, gnl|dasNov1|scaffold_62130 (6503-6172) | |
| 5-152, gnl|echTel1|scaffold_253737 (17734-18135) | |
| 5-152, gnl|echTel1|scaffold_253737 (17734-18080) | |
| 5-152, gnl|galGal2|chr19 (258672-259015) | |
| 5-152, gnl|galGal2|chr19 (258672-258980) | |
| 5-152, gnl|hg17|chr17 (31455231-31455627) | |
| 5-152, gnl|Hg17|chr17 (31455340-31455487) | |
| 5-152, gnl|hg17|chr17_random (781339-781678) | |
| 5-152, gnl|loxAfr1|scaffold_13658 (36780-36404) | |
| 5-152, gnl|loxAfr1|scaffold_13658 (36780-36437) | |
| 5-152, gnl|mm7|chr11 (83732387-83732773) | |
| 5-152, gnl|mm7|chr11 (83732387-83732718) | |
| 5-152, gnl|Mm7|chr11 (83732496-83732643) | |
| 5-152, gnl|monDom2|scaffold_44 (6926739-6926351) | |
| 5-152, gnl|monDom2|scaffold_44 (6926739-6926423) | |
| 5-152, gnl|oryCun1|scaffold_214790 (25864-26244) | |
| 5-152, gnl|oryCun1|scaffold_214790 (25864-26206) | |
| 5-152, gnl|panTro1|chr19 (34984030-34984426) | |
| 5-152, gnl|panTro1|chr19_random (2810625-2810962) | |
| 5-152, gnl|rheMac2|chr16 (31391493-31391882) | |
| 5-152, gnl|rheMac2|chr16 (31391493-31391835) | |
| 5-152, gnl|rn3|chr10 (71773832-71774219) | |
| 5-152, gnl|rn3|chr10 (71773832-71774164) | |
| 268-649, gnl|bosTau2|chr19 (6518664-6518283) | |
| 268-649, gnl|canFam2|chr9 (41001890-41001390) | |
| 268-649, gnl|dasNov1|scaffold_62130 (5084-4532) | |
| 268-649, gnl|echTel1|scaffold_253737 (19129-19643) | |
| 268-649, gnl|hg17|chr17 (31456663-31457179) | |
| 268-649, gnl|Hg17|chr17 (31456731-31457100) | |
| 268-649, gnl|loxAfr1|scaffold_13658 (35334-34815) | |
| 268-649, gnl|mm7|chr11 (83734131-83734639) | |
| 268-649, gnl|Mm7|chr11 (83734199-83734569) | |
| 268-649, gnl|monDom2|scaffold_44 (6925397-6924898) | |
| 268-649, gnl|oryCun1|scaffold_214790 (27158-27661) | |
| 268-649, gnl|panTro1|chr19 (34986075-34986605) | |
| 268-649, gnl|rheMac2|chr16 (31392928-31393454) | |
| 268-649, gnl|rn3|chr10 (71775330-71775827) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-152, gnl|bosTau2|chr19 (6519826-6519679) | |
| 5-152, gnl|canFam2|chr9 (41003278-41002882) | |
| 5-152, gnl|canFam2|chr9 (41003278-41002934) | |
| 5-152, gnl|dasNov1|scaffold_62130 (6503-6115) | |
| 5-152, gnl|dasNov1|scaffold_62130 (6503-6172) | |
| 5-152, gnl|echTel1|scaffold_253737 (17734-18135) | |
| 5-152, gnl|echTel1|scaffold_253737 (17734-18080) | |
| 5-152, gnl|galGal2|chr19 (258672-259015) | |
| 5-152, gnl|galGal2|chr19 (258672-258980) | |
| 5-152, gnl|hg17|chr17 (31455231-31455627) | |
| 5-152, gnl|Hg17|chr17 (31455340-31455487) | |
| 5-152, gnl|hg17|chr17_random (781339-781678) | |
| 5-152, gnl|loxAfr1|scaffold_13658 (36780-36404) | |
| 5-152, gnl|loxAfr1|scaffold_13658 (36780-36437) | |
| 5-152, gnl|mm7|chr11 (83732387-83732773) | |
| 5-152, gnl|mm7|chr11 (83732387-83732718) | |
| 5-152, gnl|Mm7|chr11 (83732496-83732643) | |
| 5-152, gnl|monDom2|scaffold_44 (6926739-6926351) | |
| 5-152, gnl|monDom2|scaffold_44 (6926739-6926423) | |
| 5-152, gnl|oryCun1|scaffold_214790 (25864-26244) | |
| 5-152, gnl|oryCun1|scaffold_214790 (25864-26206) | |
| 5-152, gnl|panTro1|chr19 (34984030-34984426) | |
| 5-152, gnl|panTro1|chr19_random (2810625-2810962) | |
| 5-152, gnl|rheMac2|chr16 (31391493-31391882) | |
| 5-152, gnl|rheMac2|chr16 (31391493-31391835) | |
| 5-152, gnl|rn3|chr10 (71773832-71774219) | |
| 5-152, gnl|rn3|chr10 (71773832-71774164) | |
| 268-649, gnl|bosTau2|chr19 (6518664-6518283) | |
| 268-649, gnl|canFam2|chr9 (41001890-41001390) | |
| 268-649, gnl|dasNov1|scaffold_62130 (5084-4532) | |
| 268-649, gnl|echTel1|scaffold_253737 (19129-19643) | |
| 268-649, gnl|hg17|chr17 (31456663-31457179) | |
| 268-649, gnl|Hg17|chr17 (31456731-31457100) | |
| 268-649, gnl|loxAfr1|scaffold_13658 (35334-34815) | |
| 268-649, gnl|mm7|chr11 (83734131-83734639) | |
| 268-649, gnl|Mm7|chr11 (83734199-83734569) | |
| 268-649, gnl|monDom2|scaffold_44 (6925397-6924898) | |
| 268-649, gnl|oryCun1|scaffold_214790 (27158-27661) | |
| 268-649, gnl|panTro1|chr19 (34986075-34986605) | |
| 268-649, gnl|rheMac2|chr16 (31392928-31393454) | |
| 268-649, gnl|rn3|chr10 (71775330-71775827) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| pgl (0.118483) | |
| jej (0.0989218) |