Non-Coding RNA Search

Ss1.1-Mixc-0027l05.3

Sequence:


               
               TCAGCAACTTCACAAAACGTAGCACAAACATTGATTATGGTGAAGGCATCAGGACTTTTG
AGTAACTCCTCCTTTATTTCTTTCCTACTGGCTACAGTGTGGGGTGCCCCATGGGCACAG
CCCAGTTGAAGAACAGAATGGAGGGCTTTGGGAGGAGGCAGCTCACTGGAGAGCCTACAT
TCCTTACACAAGTGCCTAAAGAGAGTGATGCCAACACTCCATCTGCCCTGTCCATCGCCT
TCATATACTGTCTACTTCGTGTTCAGTCACCCTTTGGGGAGGGGAGCTCTCTTGGGACAG
TGGGCTCAGCGTGTTGTCTTCTTGGGTGCATTTTAGGGCTGAGATCAGGGCAGTATTCCT
GTAGAGTCCAGTCATTCACCAGCATTTGCAGATGTCCATTACGAGTTGGTGGTAGTCACC
TACTCTCAGCAACAAGTTTGTGTTCTTCCTTTTTCTCTCTTTGCCTCACTCTCTCCAGTT
GGGTTTTGAGCTGAGGCCTGAAATGCATTTTTTAGCCCTTTGGCATTGTGCATGCCATGT
AAGAAATAAAAGCAAGAGAAACAGCGTGGGCAAGGGCAAGAATATGACTTCTTGCTGTGA
TATTCTTTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAGCAACTTCACAAAACGTAGCACAAACATTGATTATGGTGAAGGCATCAGGACTTTTG
AGTAACTCCTCCTTTATTTCTTTCCTACTGGCTACAGTGTGGGGTGCCCCATGGGCACAG
CCCAGTTGAAGAACAGAATGGAGGGCTTTGGGAGGAGGCAGCTCACTGGAGAGCCTACAT
TCCTTACACAAGTGCCTAAAGAGAGTGATGCCAACACTCCATCTGCCCTGTCCATCGCCT
TCATATACTGTCTACTTCGTGTTCAGTCACCCTTTGGGGAGGGGAGCTCTCTTGGGACAG
TGGGCTCAGCGTGTTGTCTTCTTGGGTGCATTTTAGGGCTGAGATCAGGGCAGTATTCCT
GTAGAGTCCAGTCATTCACCAGCATTTGCAGATGTCCATTACGAGTTGGTGGTAGTCACC
TACTCTCAGCAACAAGTTTGTGTTCTTCCTTTTTCTCTCTTTGCCTCACTCTCTCCAGTT
GGGTTTTGAGCTGAGGCCTGAAATGCATTTTTTAGCCCTTTGGCATTGTGCATGCCATGT
AAGAAATAAAAGCAAGAGAAACAGCGTGGGCAAGGGCAAGAATATGACTTCTTGCTGTGA
TATTCTTTCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               40-198, + strand, RNAz p=0.901525

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-198, + strand, RNAz p=0.901525

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_012199, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012199, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-608, gnl|bosTau2|chr3 (76957013-76956423)
               

               
               1-608, gnl|Hg17|chr1 (36056389-36056990)
               

               
               1-608, gnl|Mm7|chr4 (125882128-125881394)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-608, gnl|bosTau2|chr3 (76957013-76956423)
               

               
               1-608, gnl|Hg17|chr1 (36056389-36056990)
               

               
               1-608, gnl|Mm7|chr4 (125882128-125881394)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               che (0.136314)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               cov (0.132153)

	1-608, gnl\|bosTau2\|chr3 (76957013-76956423)
	1-608, gnl\|Hg17\|chr1 (36056389-36056990)
	1-608, gnl\|Mm7\|chr4 (125882128-125881394)