Non-Coding RNA Search

Ss1.1-Mixc-0027l21.5

Sequence:


               
               CACCAGATCTCTCTACGTTCAGAAGCATTTTTTCATGCAATGACCTCTCAACATGAATGC
AGGACTACCTCAAGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGATAAAATTGCACAGA
TTGATAAAGTAATGTGTGAAGGATCACTACACATTTTAAGACTGGCACTTACCAGAAATA
ATTGTGTTAAAGTATACAATAAACTGAAGTTAATGGCCACTGTACACCAGACTCAGCCTA
CAGTACAGGTATTGTTATCTACTTCTGAATTTGTTGGAGCATAGGACTTAATAGCAACAA
CGCAAGAGGTTCTACAGCAAGAACTTCAGGGCATTCACAGCTTCCGGCATTTGGGATCAC
AGCTTTGTGAATTAGAAAAACTGATAGATAAAATGATGATTGCAGAATTTTCTACTTACT
CTCACAGTGACTTAAATAGACCATTGGAAGATGACTGTCAAATTTTAGAAGAGGAAAGAC
TGGTATCTCTTGTATTTGGACTTTTAAAACAAAGAAAACTTAATTTTTTTAGAAATATAT
AGTGAAGAAATGATTATTACAGCAAAGAATATCATTAAACAGTGTGTGATTAATAAAGTT
TCACAAATAGAAGAAATAGACACAGATGTTGTTGTGAAGCTTGCAGATCAGATGAGGATG
TTGAATTTTCCTCAGTGGTTTGATCTGCTAAAGGATATTTTCTCCAAGTTTACAATTTTC
CTACAGAGAGTTAAGGCAACATTAAATATCATTCACAGTGTTGTTCTCTCAGTTCTTGAC
AAAAACCAAAGGACTAGAGAATTGGAGGAGATTTCACAACAGAAGAATGCTGCAAAAGAC
AATTCACTGGATACAGAGGTGGCTTATTTAATCCATGAGGGCATGTTTATAAGTGATGCA
TTCAGTGAGAGTGAATTAACACCTATAGCAATTGACACTACCTCTCAAAGAAATGCATCT
CCAAATAGTGAGCCCTGCAGCAGTGATTCAGTATCTGAACCAGAATGTACTACTGATTCT
TCATCCAGCAAAGAGCAGACATCATCATCTGCTACTCCAGGAGGTGTGGATATTATGGTC
AATGAAGACATGAAATTAACTGACTTAGAGCTAGGAAAGCTGGCAAATAATATCCAGGAG
TTATTATATAGTGCCTCAGATATATGCCATGATCGAGCTGTCAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCAGATCTCTCTACGTTCAGAAGCATTTTTTCATGCAATGACCTCTCAACATGAATGC
AGGACTACCTCAAGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGATAAAATTGCACAGA
TTGATAAAGTAATGTGTGAAGGATCACTACACATTTTAAGACTGGCACTTACCAGAAATA
ATTGTGTTAAAGTATACAATAAACTGAAGTTAATGGCCACTGTACACCAGACTCAGCCTA
CAGTACAGGTATTGTTATCTACTTCTGAATTTGTTGGAGCATAGGACTTAATAGCAACAA
CGCAAGAGGTTCTACAGCAAGAACTTCAGGGCATTCACAGCTTCCGGCATTTGGGATCAC
AGCTTTGTGAATTAGAAAAACTGATAGATAAAATGATGATTGCAGAATTTTCTACTTACT
CTCACAGTGACTTAAATAGACCATTGGAAGATGACTGTCAAATTTTAGAAGAGGAAAGAC
TGGTATCTCTTGTATTTGGACTTTTAAAACAAAGAAAACTTAATTTTTTTAGAAATATAT
AGTGAAGAAATGATTATTACAGCAAAGAATATCATTAAACAGTGTGTGATTAATAAAGTT
TCACAAATAGAAGAAATAGACACAGATGTTGTTGTGAAGCTTGCAGATCAGATGAGGATG
TTGAATTTTCCTCAGTGGTTTGATCTGCTAAAGGATATTTTCTCCAAGTTTACAATTTTC
CTACAGAGAGTTAAGGCAACATTAAATATCATTCACAGTGTTGTTCTCTCAGTTCTTGAC
AAAAACCAAAGGACTAGAGAATTGGAGGAGATTTCACAACAGAAGAATGCTGCAAAAGAC
AATTCACTGGATACAGAGGTGGCTTATTTAATCCATGAGGGCATGTTTATAAGTGATGCA
TTCAGTGAGAGTGAATTAACACCTATAGCAATTGACACTACCTCTCAAAGAAATGCATCT
CCAAATAGTGAGCCCTGCAGCAGTGATTCAGTATCTGAACCAGAATGTACTACTGATTCT
TCATCCAGCAAAGAGCAGACATCATCATCTGCTACTCCAGGAGGTGTGGATATTATGGTC
AATGAAGACATGAAATTAACTGACTTAGAGCTAGGAAAGCTGGCAAATAATATCCAGGAG
TTATTATATAGTGCCTCAGATATATGCCATGATCGAGCTGTCAAATTT

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               1-350, gnl|bosTau2|chr11 (43328476-43328826)
               

               
               1-350, gnl|canFam2|chr10 (66790938-66791334)
               

               
               1-350, gnl|danRer3|chrNA (84822157-84821761)
               

               
               1-350, gnl|dasNov1|scaffold_66214 (3640-4020)
               

               
               1-350, gnl|echTel1|scaffold_314354 (296032-295636)
               

               
               1-350, gnl|fr1|chrUn (218614163-218613774)
               

               
               1-350, gnl|galGal2|chr3 (7594285-7593892)
               

               
               1-350, gnl|hg17|chr2 (64100835-64101231)
               

               
               1-350, gnl|Hg17|chr2 (64101189-64100839)
               

               
               1-350, gnl|mm7|chr11 (21230079-21229683)
               

               
               1-350, gnl|Mm7|chr11 (21229723-21230073)
               

               
               1-350, gnl|monDom2|scaffold_1 (29210859-29211253)
               

               
               1-350, gnl|panTro1|chr12 (66326141-66326537)
               

               
               1-350, gnl|rheMac2|chr13 (64170081-64170477)
               

               
               1-350, gnl|rn3|chr14 (102051713-102051317)
               

               
               1-350, gnl|tetNig1|chrUn_random (84169605-84169216)
               

               
               1-350, gnl|xenTro1|scaffold_321 (863083-862688)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-350, gnl|bosTau2|chr11 (43328476-43328826)
               

               
               1-350, gnl|canFam2|chr10 (66790938-66791334)
               

               
               1-350, gnl|danRer3|chrNA (84822157-84821761)
               

               
               1-350, gnl|dasNov1|scaffold_66214 (3640-4020)
               

               
               1-350, gnl|echTel1|scaffold_314354 (296032-295636)
               

               
               1-350, gnl|fr1|chrUn (218614163-218613774)
               

               
               1-350, gnl|galGal2|chr3 (7594285-7593892)
               

               
               1-350, gnl|hg17|chr2 (64100835-64101231)
               

               
               1-350, gnl|Hg17|chr2 (64101189-64100839)
               

               
               1-350, gnl|mm7|chr11 (21230079-21229683)
               

               
               1-350, gnl|Mm7|chr11 (21229723-21230073)
               

               
               1-350, gnl|monDom2|scaffold_1 (29210859-29211253)
               

               
               1-350, gnl|panTro1|chr12 (66326141-66326537)
               

               
               1-350, gnl|rheMac2|chr13 (64170081-64170477)
               

               
               1-350, gnl|rn3|chr14 (102051713-102051317)
               

               
               1-350, gnl|tetNig1|chrUn_random (84169605-84169216)
               

               
               1-350, gnl|xenTro1|scaffold_321 (863083-862688)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nco (0.161734)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               spl (0.143184)

	1-350, gnl\|bosTau2\|chr11 (43328476-43328826)
	1-350, gnl\|canFam2\|chr10 (66790938-66791334)
	1-350, gnl\|danRer3\|chrNA (84822157-84821761)
	1-350, gnl\|dasNov1\|scaffold_66214 (3640-4020)
	1-350, gnl\|echTel1\|scaffold_314354 (296032-295636)
	1-350, gnl\|fr1\|chrUn (218614163-218613774)
	1-350, gnl\|galGal2\|chr3 (7594285-7593892)
	1-350, gnl\|hg17\|chr2 (64100835-64101231)
	1-350, gnl\|Hg17\|chr2 (64101189-64100839)
	1-350, gnl\|mm7\|chr11 (21230079-21229683)
	1-350, gnl\|Mm7\|chr11 (21229723-21230073)
	1-350, gnl\|monDom2\|scaffold_1 (29210859-29211253)
	1-350, gnl\|panTro1\|chr12 (66326141-66326537)
	1-350, gnl\|rheMac2\|chr13 (64170081-64170477)
	1-350, gnl\|rn3\|chr14 (102051713-102051317)
	1-350, gnl\|tetNig1\|chrUn_random (84169605-84169216)
	1-350, gnl\|xenTro1\|scaffold_321 (863083-862688)