Non-Coding RNA Search

Ss1.1-Mixc-0027m01.3

Sequence:


               
               GAGCAGCAGCAGCAGCATAAGCCACACCATGGAGCTGTCGGACCACACCCGCCTCCAGAC
ACAGCTTTTGGGTACCCACTCTACCTCCCTGAAAGCGCCCCAGTGACCAGATTTCTCTCA
GTGCAGGACATCAGGCTGAAACAAGTCTTGGGAAATTTGAAATGAAGCCATCTGAGTTTG
CAGCGGAAAGCAACAATGGCCACAAAACCGACCCAGACTGCAAATTCTCCAGCTCCTGTG
GCCCTGCCAGCCAAGCTGACCAGTCTGAAAGCTTGGATCTTGCTGGTAAAGGGGATACAA
GAGAAAAGAGGCTTGCATCTCCTCAGATAGTAAAAGAAGAACCTCCTGGCCTCGATATCC
TGGACGCAAGGGCAAAGGCAGAAGCCAAAACCCTACTGCTCCATCCCAAGTCTCAAGAAA
GCAGAGGGGCAGTGCCAGCCTCTAGTCCTACACCCTCCCCGGTTAGAAAAAGCCAGGAGG
TCACCGTGGAAGACAACAGACAGACCAAGACGGCCGCCAGCCTCAGCCTGCCATCTGATG
CCATGGGGGACTCCAGCCCAGGTTCTGGCAAGAGGACCCCTTCTCGCTCCGTCAAAGCCA
GCCCCCGCCGGGGCAGCCGGGTCAGCGAATTCCTCAAGGAGCAAAAGTTAAACGTGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGCAGCAGCAGCATAAGCCACACCATGGAGCTGTCGGACCACACCCGCCTCCAGAC
ACAGCTTTTGGGTACCCACTCTACCTCCCTGAAAGCGCCCCAGTGACCAGATTTCTCTCA
GTGCAGGACATCAGGCTGAAACAAGTCTTGGGAAATTTGAAATGAAGCCATCTGAGTTTG
CAGCGGAAAGCAACAATGGCCACAAAACCGACCCAGACTGCAAATTCTCCAGCTCCTGTG
GCCCTGCCAGCCAAGCTGACCAGTCTGAAAGCTTGGATCTTGCTGGTAAAGGGGATACAA
GAGAAAAGAGGCTTGCATCTCCTCAGATAGTAAAAGAAGAACCTCCTGGCCTCGATATCC
TGGACGCAAGGGCAAAGGCAGAAGCCAAAACCCTACTGCTCCATCCCAAGTCTCAAGAAA
GCAGAGGGGCAGTGCCAGCCTCTAGTCCTACACCCTCCCCGGTTAGAAAAAGCCAGGAGG
TCACCGTGGAAGACAACAGACAGACCAAGACGGCCGCCAGCCTCAGCCTGCCATCTGATG
CCATGGGGGACTCCAGCCCAGGTTCTGGCAAGAGGACCCCTTCTCGCTCCGTCAAAGCCA
GCCCCCGCCGGGGCAGCCGGGTCAGCGAATTCCTCAAGGAGCAAAAGTTAAACGTGACAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               212-488, - strand, RNAz p=0.981411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-488, - strand, RNAz p=0.981411

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               297-500, - strand, RNAmicro p=0.996589

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               297-500, - strand, RNAmicro p=0.996589

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               61-660, gnl|bosTau2|chr6 (15605516-15606126)
               

               
               61-660, gnl|Hg17|chr4 (90527081-90526489)
               

               
               61-660, gnl|Mm7|chr6 (59322518-59321932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               61-660, gnl|bosTau2|chr6 (15605516-15606126)
               

               
               61-660, gnl|Hg17|chr4 (90527081-90526489)
               

               
               61-660, gnl|Mm7|chr6 (59322518-59321932)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cly (0.120642)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)

	61-660, gnl\|bosTau2\|chr6 (15605516-15606126)
	61-660, gnl\|Hg17\|chr4 (90527081-90526489)
	61-660, gnl\|Mm7\|chr6 (59322518-59321932)