Non-Coding RNA Search

Ss1.1-Mixc-0027m24.5

Sequence:


               
               ACCAGCCAGTTGTCGGCCCAGGGCGTGTTGCAGCTGTGGGTGAGGGTCATGTACCGCATG
CCCAGGTGGTAGAGGGCCCGCAGGACGCCCAGGCTGCTGTCGATGGAGTGGCCACCCTCC
ACGCCCACCAGGCTGGCCACCTTGCCCTCCCGGAAGGCCTGCCGGATGCCTGTGCTGCTG
GTGACGCAGGCGAAGGTCTCGGGATACGCCTGGCACATGCGCTGGATGACGTCGATCTGC
TCCAGGGTCCTCTTCACGGCGTCTCTGTTCTGGGTGTCGCAGGGCACGTACGCGGACCAG
AACTGGCCGCCCACAAAGCCAGCCTTCAGCTTGGGGATGTTGGTGTGCGTGTGGGCCAGG
CTGGAGAGGTTGGCCCCCGGGTCCTGAAGCTGATTGTTGAACAGATTCAGCAGCTGCCAA
GGCAGGTCATTGTGCCCGTCAATGACAGGCGTGTCCTGCATAATCCTCACCGCCAGGTCC
CGGAATTGGTCCGCAGCGCAGACGGCCACCAGGGGCCAGAGCCACCAGCTGGTCCACATG
GCACGACTCCCGGGGACCCGCTGCCCAGCCGCTCCTCACGTCTGTCTGGCCGGCTGTGGC
GCCAGGAGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGCCAGTTGTCGGCCCAGGGCGTGTTGCAGCTGTGGGTGAGGGTCATGTACCGCATG
CCCAGGTGGTAGAGGGCCCGCAGGACGCCCAGGCTGCTGTCGATGGAGTGGCCACCCTCC
ACGCCCACCAGGCTGGCCACCTTGCCCTCCCGGAAGGCCTGCCGGATGCCTGTGCTGCTG
GTGACGCAGGCGAAGGTCTCGGGATACGCCTGGCACATGCGCTGGATGACGTCGATCTGC
TCCAGGGTCCTCTTCACGGCGTCTCTGTTCTGGGTGTCGCAGGGCACGTACGCGGACCAG
AACTGGCCGCCCACAAAGCCAGCCTTCAGCTTGGGGATGTTGGTGTGCGTGTGGGCCAGG
CTGGAGAGGTTGGCCCCCGGGTCCTGAAGCTGATTGTTGAACAGATTCAGCAGCTGCCAA
GGCAGGTCATTGTGCCCGTCAATGACAGGCGTGTCCTGCATAATCCTCACCGCCAGGTCC
CGGAATTGGTCCGCAGCGCAGACGGCCACCAGGGGCCAGAGCCACCAGCTGGTCCACATG
GCACGACTCCCGGGGACCCGCTGCCCAGCCGCTCCTCACGTCTGTCTGGCCGGCTGTGGC
GCCAGGAGGCAG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               18-172, gnl|bosTau2|chr18 (15431011-15430857)
               

               
               18-172, gnl|Hg17|chr16 (88230593-88230439)
               

               
               18-172, gnl|Mm7|chr8 (121840515-121840346)
               


               
               296-436, gnl|bosTau2|chr18 (15430430-15430290)
               

               
               296-436, gnl|Hg17|chr16 (88229960-88229816)
               

               
               296-436, gnl|Mm7|chr8 (121839919-121839783)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-172, gnl|bosTau2|chr18 (15431011-15430857)
               

               
               18-172, gnl|Hg17|chr16 (88230593-88230439)
               

               
               18-172, gnl|Mm7|chr8 (121840515-121840346)
               


               
               296-436, gnl|bosTau2|chr18 (15430430-15430290)
               

               
               296-436, gnl|Hg17|chr16 (88229960-88229816)
               

               
               296-436, gnl|Mm7|chr8 (121839919-121839783)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.808669)
               

               
               jej (0.197844)
               

               
               ill (0.175593)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.808669)
               

               
               jej (0.197844)
               

               
               ill (0.175593)

	18-172, gnl\|bosTau2\|chr18 (15431011-15430857)
	18-172, gnl\|Hg17\|chr16 (88230593-88230439)
	18-172, gnl\|Mm7\|chr8 (121840515-121840346)

	296-436, gnl\|bosTau2\|chr18 (15430430-15430290)
	296-436, gnl\|Hg17\|chr16 (88229960-88229816)
	296-436, gnl\|Mm7\|chr8 (121839919-121839783)