Non-Coding RNA Search

Ss1.1-Mixc-0027o15.3

Sequence:


               
               GGAGACCTGTATGTTCCTTCCTCTCATTCCGCGAGATGCCAGGGTAGCTCACGAAAAAAA
CTCAGTTGCCTGGTGCCTGTCACCGCTTGTCTACACCCAGCTCCAGCCGTGATACCAAAC
GATGCTTGGCAGCACCGATTCTATGGGGACTGCAGGTTTCCCCATGATGATAATTCACCT
GAGAAACAGCATCCTCTGGGAGAGACAGCAGGTGGTCAGCAGCCCCTTTTTTCAGACAAA
ATGGAAGAAACGTCCAGAAGGAAGATCGCACTCCCATGGCCGAAGAGTACAACGAATATA
AGCACATTAAGGCCAAACTGAGGCTCCTGGAGGTGCTCATCAGCAAGAGGGACACGGATT
CCAAGTCCATGTGAGGAGGCAGCCCTGTCCAAGCAAAGGGGGCTGGGGATGCAGCGTGAA
TGTGCCCCCCACCGCCGCCGCCTCCCCTGGTGTAATAGCAGCGCTGCAGAAACTGGAAGG
CAGCCTCGGAGCCGGACCTGCAAAGCATGTGCCCCTTCTGCCTCCAGGCCACTGGGGTCA
GCTCCAGTGCCCTTCGCCTGCCTTAGAAACCCCCTAGGAGGAAGGAGGCCACCTGCCTCT
CGCAGCGATGTTGGGAGGCAAAGTCACGTTCCCCCGCATCCTTGTGCGCAGAGACATGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGACCTGTATGTTCCTTCCTCTCATTCCGCGAGATGCCAGGGTAGCTCACGAAAAAAA
CTCAGTTGCCTGGTGCCTGTCACCGCTTGTCTACACCCAGCTCCAGCCGTGATACCAAAC
GATGCTTGGCAGCACCGATTCTATGGGGACTGCAGGTTTCCCCATGATGATAATTCACCT
GAGAAACAGCATCCTCTGGGAGAGACAGCAGGTGGTCAGCAGCCCCTTTTTTCAGACAAA
ATGGAAGAAACGTCCAGAAGGAAGATCGCACTCCCATGGCCGAAGAGTACAACGAATATA
AGCACATTAAGGCCAAACTGAGGCTCCTGGAGGTGCTCATCAGCAAGAGGGACACGGATT
CCAAGTCCATGTGAGGAGGCAGCCCTGTCCAAGCAAAGGGGGCTGGGGATGCAGCGTGAA
TGTGCCCCCCACCGCCGCCGCCTCCCCTGGTGTAATAGCAGCGCTGCAGAAACTGGAAGG
CAGCCTCGGAGCCGGACCTGCAAAGCATGTGCCCCTTCTGCCTCCAGGCCACTGGGGTCA
GCTCCAGTGCCCTTCGCCTGCCTTAGAAACCCCCTAGGAGGAAGGAGGCCACCTGCCTCT
CGCAGCGATGTTGGGAGGCAAAGTCACGTTCCCCCGCATCCTTGTGCGCAGAGACATGCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               457-575, - strand, RNAz p=0.828109

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               457-575, - strand, RNAz p=0.828109

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126217, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126217, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-656, gnl|bosTau2|chr6 (19318447-19319030)
               

               
               74-656, gnl|Hg17|chr4 (90007166-90006601)
               

               
               74-656, gnl|Mm7|chr6 (58904373-58903853)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-656, gnl|bosTau2|chr6 (19318447-19319030)
               

               
               74-656, gnl|Hg17|chr4 (90007166-90006601)
               

               
               74-656, gnl|Mm7|chr6 (58904373-58903853)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               pla (0.133672)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               pla (0.133672)

	74-656, gnl\|bosTau2\|chr6 (19318447-19319030)
	74-656, gnl\|Hg17\|chr4 (90007166-90006601)
	74-656, gnl\|Mm7\|chr6 (58904373-58903853)