Ss1.1-Mixc-0028,c03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCCACAGGGCCAGGCCTTTCCAGGCTCAGCAGGCACCGCACTTCAGTACCCACCTCC TGCCTACCCTGCTGCCAAGGGTGGCTTCCAGGTCCCCATGATCCCTGACTATCTGTTTCC ACAACAGCAGGGGGACCTGGGCCTGGGCACCCCAGACCAGAAGCCTTTCCAGGGTCTGGA GAGCCGAACCCAGCAGCCTTCGCTCACTCCACTCTCTACTATCAAGGCCTTTGCCACGCA GTCGGGCTCCCAGGACCTGAAGGCCCTCAACACCACCTACCAGTCCCAGCTCATCAAGCC CAGCCGCATGCGCAAGTACCCCAACCGGCCCAGCAAGACACCCCCCCACGAACGCCCCTA CGCCTGCCCGGTGGAGTCCTGCGACCGGCGCTTCTCCCGCTCAGATGAGCTCACCCGCCA CATCCGCATCCACACGGGCCAGAAACCCTTCCAGTGCCGCATCTGCATGCGCAACTTCAG CCGCAGTGACCACCTCACCACCCACATCCGCACCCACACGGGCGAGAAGCCCTTCGCCTG TGACATCTGTGGGAGAAAGTTTGCCAGGAGCGATGAACGCAAGAGGCATACCAAGATCCA CTTGCGGCAGAAGGACAAAAAAGCAGACAAAAGTGTGGCCTCGGCGGCCGCGTCCTCTCT CCCTTCCTACCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCCACAGGGCCAGGCCTTTCCAGGCTCAGCAGGCACCGCACTTCAGTACCCACCTCC TGCCTACCCTGCTGCCAAGGGTGGCTTCCAGGTCCCCATGATCCCTGACTATCTGTTTCC ACAACAGCAGGGGGACCTGGGCCTGGGCACCCCAGACCAGAAGCCTTTCCAGGGTCTGGA GAGCCGAACCCAGCAGCCTTCGCTCACTCCACTCTCTACTATCAAGGCCTTTGCCACGCA GTCGGGCTCCCAGGACCTGAAGGCCCTCAACACCACCTACCAGTCCCAGCTCATCAAGCC CAGCCGCATGCGCAAGTACCCCAACCGGCCCAGCAAGACACCCCCCCACGAACGCCCCTA CGCCTGCCCGGTGGAGTCCTGCGACCGGCGCTTCTCCCGCTCAGATGAGCTCACCCGCCA CATCCGCATCCACACGGGCCAGAAACCCTTCCAGTGCCGCATCTGCATGCGCAACTTCAG CCGCAGTGACCACCTCACCACCCACATCCGCACCCACACGGGCGAGAAGCCCTTCGCCTG TGACATCTGTGGGAGAAAGTTTGCCAGGAGCGATGAACGCAAGAGGCATACCAAGATCCA CTTGCGGCAGAAGGACAAAAAAGCAGACAAAAGTGTGGCCTCGGCGGCCGCGTCCTCTCT CCCTTCCTACCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-280, - strand, RNAz p=0.996731 | |
| 521-637, + strand, RNAz p=0.939958 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-280, - strand, RNAz p=0.996731 | |
| 521-637, + strand, RNAz p=0.939958 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 2-672, gnl|bosTau2|chr7 (34936960-34937630) | |
| 2-672, gnl|Hg17|chr5 (137830692-137831365) | |
| 2-672, gnl|Mm7|chr18 (35238916-35239589) | |
| 311-626, gnl|bosTau2|chr28 (13118641-13118325) | |
| 311-626, gnl|Hg17|chr10 (64243434-64243118) | |
| 311-626, gnl|Mm7|chr10 (67143902-67144218) | |
| 362-614, gnl|bosTau2|chr11 (8978617-8978365) | |
| 362-614, gnl|canFam2|chr17 (52651539-52651262) | |
| 362-614, gnl|danRer3|chrNA (241088807-241089084) | |
| 362-614, gnl|dasNov1|scaffold_200084 (1416-1147) | |
| 362-614, gnl|echTel1|scaffold_257009 (9769-10046) | |
| 362-614, gnl|fr1|chrUn (123586631-123586354) | |
| 362-614, gnl|galGal2|chr4 (89723207-89722930) | |
| 362-614, gnl|hg17|chr2 (73430294-73430571) | |
| 362-614, gnl|Hg17|chr2 (73430560-73430308) | |
| 362-614, gnl|loxAfr1|scaffold_55642 (7503-7780) | |
| 362-614, gnl|mm7|chr6 (85541339-85541616) | |
| 362-614, gnl|Mm7|chr6 (85541605-85541353) | |
| 362-614, gnl|monDom2|scaffold_61 (10978380-10978103) | |
| 362-614, gnl|oryCun1|scaffold_193007 (82897-83174) | |
| 362-614, gnl|panTro1|chr12 (75841049-75841326) | |
| 362-614, gnl|rheMac2|chr13 (73595918-73596195) | |
| 362-614, gnl|rn3|chr4 (120010341-120010618) | |
| 362-614, gnl|tetNig1|chr18 (5694554-5694815) | |
| 362-614, gnl|xenTro1|scaffold_778 (264452-264175) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-672, gnl|bosTau2|chr7 (34936960-34937630) | |
| 2-672, gnl|Hg17|chr5 (137830692-137831365) | |
| 2-672, gnl|Mm7|chr18 (35238916-35239589) | |
| 311-626, gnl|bosTau2|chr28 (13118641-13118325) | |
| 311-626, gnl|Hg17|chr10 (64243434-64243118) | |
| 311-626, gnl|Mm7|chr10 (67143902-67144218) | |
| 362-614, gnl|bosTau2|chr11 (8978617-8978365) | |
| 362-614, gnl|canFam2|chr17 (52651539-52651262) | |
| 362-614, gnl|danRer3|chrNA (241088807-241089084) | |
| 362-614, gnl|dasNov1|scaffold_200084 (1416-1147) | |
| 362-614, gnl|echTel1|scaffold_257009 (9769-10046) | |
| 362-614, gnl|fr1|chrUn (123586631-123586354) | |
| 362-614, gnl|galGal2|chr4 (89723207-89722930) | |
| 362-614, gnl|hg17|chr2 (73430294-73430571) | |
| 362-614, gnl|Hg17|chr2 (73430560-73430308) | |
| 362-614, gnl|loxAfr1|scaffold_55642 (7503-7780) | |
| 362-614, gnl|mm7|chr6 (85541339-85541616) | |
| 362-614, gnl|Mm7|chr6 (85541605-85541353) | |
| 362-614, gnl|monDom2|scaffold_61 (10978380-10978103) | |
| 362-614, gnl|oryCun1|scaffold_193007 (82897-83174) | |
| 362-614, gnl|panTro1|chr12 (75841049-75841326) | |
| 362-614, gnl|rheMac2|chr13 (73595918-73596195) | |
| 362-614, gnl|rn3|chr4 (120010341-120010618) | |
| 362-614, gnl|tetNig1|chr18 (5694554-5694815) | |
| 362-614, gnl|xenTro1|scaffold_778 (264452-264175) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |