Non-Coding RNA Search

Ss1.1-Mixc-0028,c06.3

Sequence:


               
               CATTCTGATCCACCATGTAGATCTGTATTTAGTATCATTGGATTGCGAGGAAGTGTTGAT
TACATTATGGCTGTGTAATAAAATGTTTATTAAAACTGCATCACACTGTAGCCACTTTGC
CACTACCTCCCCACATGCAGCTGCTGAAACTTTCGTTCTGAGACGCCAAGACACAGCGGG
GAGAAAAGCCAACCAAAGAAGACCGAAAGTTAACTTATCACCTGAATAGCCTGCTTGGTG
ACTGGAATCAAGGCTAAGGACTTGAAACTGAGATCTTGACCAGGCATGAGACATTGGCTT
TGTCTCAATAGCTGGGCTTCTTGGTGGTTAATAGTATTTCTTGTGCTGGGGAGTCGCAGC
AGTGGCCCCCTGCTCCACCCCTCCAAGTGGTTTCAGTGTTGAAGGGTGCGGCACCCAAGG
GTGCTTTATACATTTTTCACTTCCTTCGAAGAAGCAAAAAGGCCAATGTCCATATGCCTA
GCTCATGATGTTATAGGTCTGTTTGTCTGTCTCACTTCTGACAGGTGCAGGGAAAGTCTA
CTGCCTACAACTTCCCTTCAGAAAGAATGCTTTTGTTTTCTTTGTTTCTGTGAAGTCGTG
ACCTGTCACTCAAACTGTAAAGATATTTGTAAATAAACTTTATGCCCTGTTTTAACAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTCTGATCCACCATGTAGATCTGTATTTAGTATCATTGGATTGCGAGGAAGTGTTGAT
TACATTATGGCTGTGTAATAAAATGTTTATTAAAACTGCATCACACTGTAGCCACTTTGC
CACTACCTCCCCACATGCAGCTGCTGAAACTTTCGTTCTGAGACGCCAAGACACAGCGGG
GAGAAAAGCCAACCAAAGAAGACCGAAAGTTAACTTATCACCTGAATAGCCTGCTTGGTG
ACTGGAATCAAGGCTAAGGACTTGAAACTGAGATCTTGACCAGGCATGAGACATTGGCTT
TGTCTCAATAGCTGGGCTTCTTGGTGGTTAATAGTATTTCTTGTGCTGGGGAGTCGCAGC
AGTGGCCCCCTGCTCCACCCCTCCAAGTGGTTTCAGTGTTGAAGGGTGCGGCACCCAAGG
GTGCTTTATACATTTTTCACTTCCTTCGAAGAAGCAAAAAGGCCAATGTCCATATGCCTA
GCTCATGATGTTATAGGTCTGTTTGTCTGTCTCACTTCTGACAGGTGCAGGGAAAGTCTA
CTGCCTACAACTTCCCTTCAGAAAGAATGCTTTTGTTTTCTTTGTTTCTGTGAAGTCGTG
ACCTGTCACTCAAACTGTAAAGATATTTGTAAATAAACTTTATGCCCTGTTTTAACAAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-159, - strand, RNAz p=0.99531

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.99531

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-173, - strand, RNAmicro p=0.993478

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-173, - strand, RNAmicro p=0.993478

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-150, BX118350 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone 
(emb|BX118350.1|), blast E-value=0, identity=94.7% 
               

               
               1-159, 226053 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF076477.1|), 
blast E-value=0, identity=93.12% 
               

               
               1-159, 454682 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI541100.1|), 
blast E-value=0, identity=93.12% 
               

               
               1-159, 4094710 BARC 10BOV Bos taurus cDNA clone 10BOV33_C21 5', mRNA 
(gb|CK954867.1|), blast E-value=0, identity=93.12% 
               

               
               1-159, BovGen_09987 normal cattle brain Bos taurus cDNA clone (gb|CO881662.1|), 
blast E-value=0, identity=93.12% 
               

               
               1-159, BovGen_13806 normal cattle brain Bos taurus cDNA clone (gb|CO885481.1|), 
blast E-value=0, identity=93.12%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-150, BX118350 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone 
(emb|BX118350.1|), blast E-value=0, identity=94.7% 
               

               
               1-159, 226053 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF076477.1|), 
blast E-value=0, identity=93.12% 
               

               
               1-159, 454682 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI541100.1|), 
blast E-value=0, identity=93.12% 
               

               
               1-159, 4094710 BARC 10BOV Bos taurus cDNA clone 10BOV33_C21 5', mRNA 
(gb|CK954867.1|), blast E-value=0, identity=93.12% 
               

               
               1-159, BovGen_09987 normal cattle brain Bos taurus cDNA clone (gb|CO881662.1|), 
blast E-value=0, identity=93.12% 
               

               
               1-159, BovGen_13806 normal cattle brain Bos taurus cDNA clone (gb|CO885481.1|), 
blast E-value=0, identity=93.12%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-264, gnl|bosTau2|chr10 (22996969-22997232)
               

               
               1-264, gnl|Hg17|chr15 (39562372-39562634)
               

               
               1-264, gnl|Mm7|chr2 (119475628-119475886)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-264, gnl|bosTau2|chr10 (22996969-22997232)
               

               
               1-264, gnl|Hg17|chr15 (39562372-39562634)
               

               
               1-264, gnl|Mm7|chr2 (119475628-119475886)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               che (0.136314)

	1-150, BX118350 Soares_fetal_heart_NbHH19W Homo sapiens cDNA clone (emb\|BX118350.1\|), blast E-value=0, identity=94.7%
	1-159, 226053 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF076477.1\|), blast E-value=0, identity=93.12%
	1-159, 454682 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI541100.1\|), blast E-value=0, identity=93.12%
	1-159, 4094710 BARC 10BOV Bos taurus cDNA clone 10BOV33_C21 5', mRNA (gb\|CK954867.1\|), blast E-value=0, identity=93.12%
	1-159, BovGen_09987 normal cattle brain Bos taurus cDNA clone (gb\|CO881662.1\|), blast E-value=0, identity=93.12%
	1-159, BovGen_13806 normal cattle brain Bos taurus cDNA clone (gb\|CO885481.1\|), blast E-value=0, identity=93.12%

	1-264, gnl\|bosTau2\|chr10 (22996969-22997232)
	1-264, gnl\|Hg17\|chr15 (39562372-39562634)
	1-264, gnl\|Mm7\|chr2 (119475628-119475886)