Ss1.1-Mixc-0028,n22.3
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GCCAGTGCTCCCTCCCCAGGAAGTGTGCCCCAAACCTCTTCATATTGAAGATGGATTAGG
AGAGGGGGTGATGACCCCTTCCAAGCCCCTCGGGGCCCAGGCCTTCCTGCTCTCCAGTGG
GGGAATCCCCACCACCTCAGACTTGGCTGTTCTTCAGTGCTGGAGGTCCTGGCACCGTCA
GGTGGGGGATAAGCCTGGGCTCCATAGGGCCCAGCCCTGGCAGGGGTCTGGCCCCCCAGG
TAGGTGGAGAGCAGTCCCTCCCTCAGAAACTGGAGGAGGGACTCTGGGAATGGGGGAATG
TGACACCCCCATCCCAAAGCCAGCTGGCACCTCCAGTTTGCACAGGGACTTGTTCTGGGG
GCTGAGGGCCCTGCCCCACCCCCGCCCTTGGTGCTGTCATAAAAGGGCAGGCAGGGGCAG
GCTGAGGAGCAGCCCCTTGCCCCCAACCCCAGAGACTGACTCTCAGAGCCAGAGATTGGA
TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCACTGGCCTGCACAGAGAGC
ATGAGTGAGTGTGTAAAAGCTTGGCCCTGTGCCCTGCAGTGGGGCCAGCTGGGCCGTCAG
CGGAATAAAGGCTAAGATGAAAAAAAAAAAAAAAAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCAGTGCTCCCTCCCCAGGAAGTGTGCCCCAAACCTCTTCATATTGAAGATGGATTAGG
AGAGGGGGTGATGACCCCTTCCAAGCCCCTCGGGGCCCAGGCCTTCCTGCTCTCCAGTGG
GGGAATCCCCACCACCTCAGACTTGGCTGTTCTTCAGTGCTGGAGGTCCTGGCACCGTCA
GGTGGGGGATAAGCCTGGGCTCCATAGGGCCCAGCCCTGGCAGGGGTCTGGCCCCCCAGG
TAGGTGGAGAGCAGTCCCTCCCTCAGAAACTGGAGGAGGGACTCTGGGAATGGGGGAATG
TGACACCCCCATCCCAAAGCCAGCTGGCACCTCCAGTTTGCACAGGGACTTGTTCTGGGG
GCTGAGGGCCCTGCCCCACCCCCGCCCTTGGTGCTGTCATAAAAGGGCAGGCAGGGGCAG
GCTGAGGAGCAGCCCCTTGCCCCCAACCCCAGAGACTGACTCTCAGAGCCAGAGATTGGA
TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCACTGGCCTGCACAGAGAGC
ATGAGTGAGTGTGTAAAAGCTTGGCCCTGTGCCCTGCAGTGGGGCCAGCTGGGCCGTCAG
CGGAATAAAGGCTAAGATGAAAAAAAAAAAAAAAAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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256-423, - strand, RNAmicro p=1 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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256-423, - strand, RNAmicro p=1 |
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9-602, 601298930F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE382946.1|),
blast E-value=4e-27, identity=94.19% |
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9-612, UI-CF-EN1-acv-l-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone
(gb|BU684790.1|), blast E-value=9e-31, identity=93.75% |
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5-476, CT02030A1G05 Equine Articular Cartilage cDNA Library Equus caballus
(gb|CX601596.1|), blast E-value=0, identity=93.91% |
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5-599, 1251878 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN514736.1|),
blast E-value=0.00000000000005, identity=92.65% |
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5-612, nad29c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris
(gb|DN873865.1|), blast E-value=3e-40, identity=97.92% |
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5-612, nad33c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris
(gb|DN874483.1|), blast E-value=3e-40, identity=97.92% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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9-602, 601298930F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE382946.1|),
blast E-value=4e-27, identity=94.19% |
|
9-612, UI-CF-EN1-acv-l-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone
(gb|BU684790.1|), blast E-value=9e-31, identity=93.75% |
|
5-476, CT02030A1G05 Equine Articular Cartilage cDNA Library Equus caballus
(gb|CX601596.1|), blast E-value=0, identity=93.91% |
|
5-599, 1251878 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN514736.1|),
blast E-value=0.00000000000005, identity=92.65% |
|
5-612, nad29c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris
(gb|DN873865.1|), blast E-value=3e-40, identity=97.92% |
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5-612, nad33c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris
(gb|DN874483.1|), blast E-value=3e-40, identity=97.92% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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pty (0.285429) |
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eep (0.122564) |
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pty (0.285429) |
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eep (0.122564) |