Non-Coding RNA Search

Ss1.1-Mixc-0028,n22.3

Sequence:


               
               GCCAGTGCTCCCTCCCCAGGAAGTGTGCCCCAAACCTCTTCATATTGAAGATGGATTAGG
AGAGGGGGTGATGACCCCTTCCAAGCCCCTCGGGGCCCAGGCCTTCCTGCTCTCCAGTGG
GGGAATCCCCACCACCTCAGACTTGGCTGTTCTTCAGTGCTGGAGGTCCTGGCACCGTCA
GGTGGGGGATAAGCCTGGGCTCCATAGGGCCCAGCCCTGGCAGGGGTCTGGCCCCCCAGG
TAGGTGGAGAGCAGTCCCTCCCTCAGAAACTGGAGGAGGGACTCTGGGAATGGGGGAATG
TGACACCCCCATCCCAAAGCCAGCTGGCACCTCCAGTTTGCACAGGGACTTGTTCTGGGG
GCTGAGGGCCCTGCCCCACCCCCGCCCTTGGTGCTGTCATAAAAGGGCAGGCAGGGGCAG
GCTGAGGAGCAGCCCCTTGCCCCCAACCCCAGAGACTGACTCTCAGAGCCAGAGATTGGA
TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCACTGGCCTGCACAGAGAGC
ATGAGTGAGTGTGTAAAAGCTTGGCCCTGTGCCCTGCAGTGGGGCCAGCTGGGCCGTCAG
CGGAATAAAGGCTAAGATGAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAGTGCTCCCTCCCCAGGAAGTGTGCCCCAAACCTCTTCATATTGAAGATGGATTAGG
AGAGGGGGTGATGACCCCTTCCAAGCCCCTCGGGGCCCAGGCCTTCCTGCTCTCCAGTGG
GGGAATCCCCACCACCTCAGACTTGGCTGTTCTTCAGTGCTGGAGGTCCTGGCACCGTCA
GGTGGGGGATAAGCCTGGGCTCCATAGGGCCCAGCCCTGGCAGGGGTCTGGCCCCCCAGG
TAGGTGGAGAGCAGTCCCTCCCTCAGAAACTGGAGGAGGGACTCTGGGAATGGGGGAATG
TGACACCCCCATCCCAAAGCCAGCTGGCACCTCCAGTTTGCACAGGGACTTGTTCTGGGG
GCTGAGGGCCCTGCCCCACCCCCGCCCTTGGTGCTGTCATAAAAGGGCAGGCAGGGGCAG
GCTGAGGAGCAGCCCCTTGCCCCCAACCCCAGAGACTGACTCTCAGAGCCAGAGATTGGA
TGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGCACGCACTGGCCTGCACAGAGAGC
ATGAGTGAGTGTGTAAAAGCTTGGCCCTGTGCCCTGCAGTGGGGCCAGCTGGGCCGTCAG
CGGAATAAAGGCTAAGATGAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-620, + strand, RNAz p=0.998173

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-620, + strand, RNAz p=0.998173

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               256-423, - strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               256-423, - strand, RNAmicro p=1

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               9-602, 601298930F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE382946.1|), 
blast E-value=4e-27, identity=94.19% 
               

               
               9-612, UI-CF-EN1-acv-l-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone 
(gb|BU684790.1|), blast E-value=9e-31, identity=93.75% 
               

               
               5-476, CT02030A1G05 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX601596.1|), blast E-value=0, identity=93.91% 
               

               
               5-599, 1251878 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN514736.1|), 
blast E-value=0.00000000000005, identity=92.65% 
               

               
               5-612, nad29c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN873865.1|), blast E-value=3e-40, identity=97.92% 
               

               
               5-612, nad33c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN874483.1|), blast E-value=3e-40, identity=97.92%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               9-602, 601298930F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE382946.1|), 
blast E-value=4e-27, identity=94.19% 
               

               
               9-612, UI-CF-EN1-acv-l-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone 
(gb|BU684790.1|), blast E-value=9e-31, identity=93.75% 
               

               
               5-476, CT02030A1G05 Equine Articular Cartilage cDNA Library Equus caballus 
(gb|CX601596.1|), blast E-value=0, identity=93.91% 
               

               
               5-599, 1251878 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN514736.1|), 
blast E-value=0.00000000000005, identity=92.65% 
               

               
               5-612, nad29c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN873865.1|), blast E-value=3e-40, identity=97.92% 
               

               
               5-612, nad33c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris 
(gb|DN874483.1|), blast E-value=3e-40, identity=97.92%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004443, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004443, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-620, gnl|bosTau2|chr1 (53887854-53887242)
               

               
               1-620, gnl|Hg17|chr3 (185782261-185782898)
               

               
               1-620, gnl|Mm7|chr16 (20872093-20872737)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-620, gnl|bosTau2|chr1 (53887854-53887242)
               

               
               1-620, gnl|Hg17|chr3 (185782261-185782898)
               

               
               1-620, gnl|Mm7|chr16 (20872093-20872737)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pty (0.285429)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.285429)
               

               
               eep (0.122564)

	9-602, 601298930F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb\|BE382946.1\|), blast E-value=4e-27, identity=94.19%
	9-612, UI-CF-EN1-acv-l-03-0-UI.s1 UI-CF-EN1 Homo sapiens cDNA clone (gb\|BU684790.1\|), blast E-value=9e-31, identity=93.75%
	5-476, CT02030A1G05 Equine Articular Cartilage cDNA Library Equus caballus (gb\|CX601596.1\|), blast E-value=0, identity=93.91%
	5-599, 1251878 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN514736.1\|), blast E-value=0.00000000000005, identity=92.65%
	5-612, nad29c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris (gb\|DN873865.1\|), blast E-value=3e-40, identity=97.92%
	5-612, nad33c08.x1 Dog eye cornea. Unnormalized (nad) Canis familiaris (gb\|DN874483.1\|), blast E-value=3e-40, identity=97.92%

	1-620, gnl\|bosTau2\|chr1 (53887854-53887242)
	1-620, gnl\|Hg17\|chr3 (185782261-185782898)
	1-620, gnl\|Mm7\|chr16 (20872093-20872737)