Non-Coding RNA Search

Ss1.1-Mixc-0028a19.5

Sequence:


               
               GGTCATTTATAAGCCCAATGATTCATTGTCATATTGTAATCTGTCTTTATAACAATGCGA
CTGTTATCAGTAACGCTAAATCTGTAACATGTAACACGTTTTCCCTACAGAAAAAGCACA
ATTAAAAAAAAATTCCTTACTAAGTAGGTGACAAGTTTGACAGTGTTTGACATTTATATT
AAATAATCTGTTTCTCTATAAAATACAGTTGTAGCTTTAGTGGATTAAATTTAGTTGAAC
ATAGAGAACAAAGTAAAAGTAGTGTCTTCCAGGAAGTCAAGAGTGTTTAACTGTGTACTG
AATAGGCTCCCTAATTCACTGTACTAAAAACAATTAACTGCCCTCTGAAGTAATGGGATT
TGAAATAAATAAAACCCCTACATCCTAAAGGGTCTCAATATGAAGGCATGCGTCTGCCTC
ATGTGACTTTGCATCTTATTACCCAGTCGAAAAGATAATCATCAACAAAAAGACTGGATT
TGCAGAGGGTTTGTTTCATGCCTGGTGATAATTCTGGTGGATCTCAATGTGTATATATAT
TTTTTAATTCTGCAAACCCTGAAAGAGTCAGAAACGGGTCCTGAACAGGAGGCCCCTTCC
TTTATCTCTTCCCCACAAGAGAAAGAGATGGAAACTCTGAGACAATAAAGGCATTTGTTT
AGTGAAGGCTGTGTGTGCCTTAACCTGCATCCTCAGTGGAAATGGCAATGAGAATCATCA
GATTCTAGGTCTCCATCCTAGAGATTCTGAATATCAGGTCTGGGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCATTTATAAGCCCAATGATTCATTGTCATATTGTAATCTGTCTTTATAACAATGCGA
CTGTTATCAGTAACGCTAAATCTGTAACATGTAACACGTTTTCCCTACAGAAAAAGCACA
ATTAAAAAAAAATTCCTTACTAAGTAGGTGACAAGTTTGACAGTGTTTGACATTTATATT
AAATAATCTGTTTCTCTATAAAATACAGTTGTAGCTTTAGTGGATTAAATTTAGTTGAAC
ATAGAGAACAAAGTAAAAGTAGTGTCTTCCAGGAAGTCAAGAGTGTTTAACTGTGTACTG
AATAGGCTCCCTAATTCACTGTACTAAAAACAATTAACTGCCCTCTGAAGTAATGGGATT
TGAAATAAATAAAACCCCTACATCCTAAAGGGTCTCAATATGAAGGCATGCGTCTGCCTC
ATGTGACTTTGCATCTTATTACCCAGTCGAAAAGATAATCATCAACAAAAAGACTGGATT
TGCAGAGGGTTTGTTTCATGCCTGGTGATAATTCTGGTGGATCTCAATGTGTATATATAT
TTTTTAATTCTGCAAACCCTGAAAGAGTCAGAAACGGGTCCTGAACAGGAGGCCCCTTCC
TTTATCTCTTCCCCACAAGAGAAAGAGATGGAAACTCTGAGACAATAAAGGCATTTGTTT
AGTGAAGGCTGTGTGTGCCTTAACCTGCATCCTCAGTGGAAATGGCAATGAGAATCATCA
GATTCTAGGTCTCCATCCTAGAGATTCTGAATATCAGGTCTGGGGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               524-637, - strand, RNAz p=0.526795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-637, - strand, RNAz p=0.526795

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-768, gnl|bosTau2|chr6 (34542463-34541704)
               

               
               1-768, gnl|Hg17|chr4 (55002975-55003754)
               

               
               1-768, gnl|Mm7|chr5 (74613961-74614753)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-768, gnl|bosTau2|chr6 (34542463-34541704)
               

               
               1-768, gnl|Hg17|chr4 (55002975-55003754)
               

               
               1-768, gnl|Mm7|chr5 (74613961-74614753)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)

	1-768, gnl\|bosTau2\|chr6 (34542463-34541704)
	1-768, gnl\|Hg17\|chr4 (55002975-55003754)
	1-768, gnl\|Mm7\|chr5 (74613961-74614753)

	nlu (0.191681)
	fhi (0.169578)
	pla (0.133672)
	nmm (0.132802)
	ova (0.129132)
	ecc (0.115035)