Non-Coding RNA Search

Ss1.1-Mixc-0028b07.3

Sequence:


               
               GAGAGCTCCAGCACAGCCACACCACAGAAGAGGAAGTCCTGCCAAACTGAGGCCCCCAGG
AAGGTCATCAAGATGGAGTCAGAAGTGGAGGAGGAGAGGGCTCGGAACTCCCCCGAGCAG
CCCAGGCCCAGCACCTCTAAGGCAGTCTCACCACCCCACCTGGACGGGCCCCTCAGCCCC
AAGAGCCCCACCAAAGGAAATGAGCTCTTCTGGCCTGACAGCAACCACGTGACTGGCAAC
AACCCCGGGGAGGCAGAGGAGCGCGTCGTGGTGATCAGCAGCTCAGAAGACTCAGATGCT
GAAAACTCGTGTGCGGAGCCCATGGAGATCAACGCACCTTCCTCCTCGCCAACCCACCCC
TCGCCAAGAGCTCGCCATGCGTCCCGCCCCTGCCGGGCCTTCCGTCCGCCCCGTGGTACA
TGCCGCTTCCAAGCTCGGCCTCCCGACCATCCGGAGCAAGCCGCCAACCCCAACGCTGAG
TGTCCCAGCCAGCCCACCGGTCTCCAGGAACAAGCTGCCAGCCCCCCGGGTGTCCGCCTC
CTGTCACGCGGAGCACTGAGAATCCCACGCCTTCGCCACATCCTGCGTCTGCCCCTCAAA
GTGTGTCGTGGCATCACATTGACTTGTCCTCCTGCCATGGTCCAAGCCACCACTCCTGCC
ACCACCACGCCTCCCAGCCATCCTGCCAATCCCCAGGAGTGTCCCACCCACCTCCAAAGG
GTTAACGGCCAACCCTTCCGGGTGCGAGGGGTAGCTTCGATCCCGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGCTCCAGCACAGCCACACCACAGAAGAGGAAGTCCTGCCAAACTGAGGCCCCCAGG
AAGGTCATCAAGATGGAGTCAGAAGTGGAGGAGGAGAGGGCTCGGAACTCCCCCGAGCAG
CCCAGGCCCAGCACCTCTAAGGCAGTCTCACCACCCCACCTGGACGGGCCCCTCAGCCCC
AAGAGCCCCACCAAAGGAAATGAGCTCTTCTGGCCTGACAGCAACCACGTGACTGGCAAC
AACCCCGGGGAGGCAGAGGAGCGCGTCGTGGTGATCAGCAGCTCAGAAGACTCAGATGCT
GAAAACTCGTGTGCGGAGCCCATGGAGATCAACGCACCTTCCTCCTCGCCAACCCACCCC
TCGCCAAGAGCTCGCCATGCGTCCCGCCCCTGCCGGGCCTTCCGTCCGCCCCGTGGTACA
TGCCGCTTCCAAGCTCGGCCTCCCGACCATCCGGAGCAAGCCGCCAACCCCAACGCTGAG
TGTCCCAGCCAGCCCACCGGTCTCCAGGAACAAGCTGCCAGCCCCCCGGGTGTCCGCCTC
CTGTCACGCGGAGCACTGAGAATCCCACGCCTTCGCCACATCCTGCGTCTGCCCCTCAAA
GTGTGTCGTGGCATCACATTGACTTGTCCTCCTGCCATGGTCCAAGCCACCACTCCTGCC
ACCACCACGCCTCCCAGCCATCCTGCCAATCCCCAGGAGTGTCCCACCCACCTCCAAAGG
GTTAACGGCCAACCCTTCCGGGTGCGAGGGGTAGCTTCGATCCCGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UE85_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UE85_HUMAN

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-240, gnl|bosTau2|chr21 (24008282-24008527)
               

               
               1-240, gnl|canFam2|chr30 (40264277-40264465)
               

               
               1-240, gnl|dasNov1|scaffold_45093 (13633-13470)
               

               
               1-240, gnl|echTel1|scaffold_111187 (848-671)
               

               
               1-240, gnl|hg17|chr15 (72112524-72112715)
               

               
               1-240, gnl|Hg17|chr15 (72112550-72112795)
               

               
               1-240, gnl|mm7|chr9 (58258571-58258379)
               

               
               1-240, gnl|Mm7|chr9 (58258542-58258297)
               

               
               1-240, gnl|monDom2|scaffold_41 (4305179-4304949)
               

               
               1-240, gnl|oryCun1|scaffold_131191 (211-391)
               

               
               1-240, gnl|panTro1|chr16_random (21247193-21247384)
               

               
               1-240, gnl|rheMac2|chr7 (52720001-52720192)
               

               
               1-240, gnl|rn3|chr8 (62050220-62050028)
               


               
               311-764, gnl|bosTau2|chr21 (24010870-24011328)
               

               
               311-764, gnl|Hg17|chr15 (72114567-72115049)
               

               
               311-764, gnl|Mm7|chr9 (58256478-58256048)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr21 (24008282-24008527)
               

               
               1-240, gnl|canFam2|chr30 (40264277-40264465)
               

               
               1-240, gnl|dasNov1|scaffold_45093 (13633-13470)
               

               
               1-240, gnl|echTel1|scaffold_111187 (848-671)
               

               
               1-240, gnl|hg17|chr15 (72112524-72112715)
               

               
               1-240, gnl|Hg17|chr15 (72112550-72112795)
               

               
               1-240, gnl|mm7|chr9 (58258571-58258379)
               

               
               1-240, gnl|Mm7|chr9 (58258542-58258297)
               

               
               1-240, gnl|monDom2|scaffold_41 (4305179-4304949)
               

               
               1-240, gnl|oryCun1|scaffold_131191 (211-391)
               

               
               1-240, gnl|panTro1|chr16_random (21247193-21247384)
               

               
               1-240, gnl|rheMac2|chr7 (52720001-52720192)
               

               
               1-240, gnl|rn3|chr8 (62050220-62050028)
               


               
               311-764, gnl|bosTau2|chr21 (24010870-24011328)
               

               
               311-764, gnl|Hg17|chr15 (72114567-72115049)
               

               
               311-764, gnl|Mm7|chr9 (58256478-58256048)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cag (0.151194)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               clu (0.119646)

	1-240, gnl\|bosTau2\|chr21 (24008282-24008527)
	1-240, gnl\|canFam2\|chr30 (40264277-40264465)
	1-240, gnl\|dasNov1\|scaffold_45093 (13633-13470)
	1-240, gnl\|echTel1\|scaffold_111187 (848-671)
	1-240, gnl\|hg17\|chr15 (72112524-72112715)
	1-240, gnl\|Hg17\|chr15 (72112550-72112795)
	1-240, gnl\|mm7\|chr9 (58258571-58258379)
	1-240, gnl\|Mm7\|chr9 (58258542-58258297)
	1-240, gnl\|monDom2\|scaffold_41 (4305179-4304949)
	1-240, gnl\|oryCun1\|scaffold_131191 (211-391)
	1-240, gnl\|panTro1\|chr16_random (21247193-21247384)
	1-240, gnl\|rheMac2\|chr7 (52720001-52720192)
	1-240, gnl\|rn3\|chr8 (62050220-62050028)

	311-764, gnl\|bosTau2\|chr21 (24010870-24011328)
	311-764, gnl\|Hg17\|chr15 (72114567-72115049)
	311-764, gnl\|Mm7\|chr9 (58256478-58256048)