Ss1.1-Mixc-0028e20.5
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CTGACCTAACCTCACCCTTTCTGTCCCTTATTGCCAAGAACTGGGCTCTTGCTTTTGTCC
CTGGTTGTGGCACCATGCACCTTGACTTCGGAAAAGACCTTGTGACCGTGACCCTACCCA
TGTGTCTCCTGGGGGAAGTTGCTCCACCATCCTGGGTGCCACCCTGGCATTATCAGGCTG
TATTCCTAGGACCCCGTAACAGAGGGCCTCCAGGGCCAGCCTTTTGGAGAGAGGGTGCAT
TTCATTTTTAGGCTGGCAGATGACATGTGTGGGGTAGCTTCCAAACTCCCCAAAGTGCCC
TGACTCTCAGAAGTTTCTTAAGTCCACTCTCAGAACCCTGATCCTTGTTCCCACATCCCA
GGGAAACGACATACTCTGTATTTTTGTTTTATTTAGAAATGATTTAAAAAACATTATACA
AAGGCTGATCAGTTTAAAATGTGACTGACACTGAAATGCTGTGATGTTCCCCAGACTGAG
GGGAAGCTGGGCTCTGGGGCCCCCAGTGCTTTGCCCCTCTGTCTGTCTGCCCTGTCCTGG
GATGATGGACAAACAGATGACTACATGGCAGGAGAATCCATGATTGGAAGCCTCCAGGCT
GAGCCCTTCTGGGCCTGGCCCTGCATCCCTCACATCTGCAGCCTGGGCTGCCTGCCTCCA
TCTCCTGCTCTTTCTCAGCTGACCTCAGTAGTACCAGGAGCCAGTGGGGAGCCTGGGGGG
CCTAGAACTTTCAAGAAGTGAGAGCACCAACCTGAGGAGTGGAGAGGGACCAGGAAGGGG
AGAAGGGAGGCCAAGAAAAGATGGATAAAAGAGACACTTCTGATCTCATCTTGGACCTTA
GAGGGGTCCACGGGTGGGGACCCAAGGCCCAGCTGGCTCACTGGATGGCCAGGGCAAGTA
ACAGCCTCTCTGTGCTGCATTTGAGGGCACAGTGAGAGTTAGCCCTGGCTCCCAGGGCCT
ACATGAGTTACATGTGAGTGAACAGGGGTGAGCTAA
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Blue-coloured subsequences are predicted RNA structures by RNAz
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CTGACCTAACCTCACCCTTTCTGTCCCTTATTGCCAAGAACTGGGCTCTTGCTTTTGTCC
CTGGTTGTGGCACCATGCACCTTGACTTCGGAAAAGACCTTGTGACCGTGACCCTACCCA
TGTGTCTCCTGGGGGAAGTTGCTCCACCATCCTGGGTGCCACCCTGGCATTATCAGGCTG
TATTCCTAGGACCCCGTAACAGAGGGCCTCCAGGGCCAGCCTTTTGGAGAGAGGGTGCAT
TTCATTTTTAGGCTGGCAGATGACATGTGTGGGGTAGCTTCCAAACTCCCCAAAGTGCCC
TGACTCTCAGAAGTTTCTTAAGTCCACTCTCAGAACCCTGATCCTTGTTCCCACATCCCA
GGGAAACGACATACTCTGTATTTTTGTTTTATTTAGAAATGATTTAAAAAACATTATACA
AAGGCTGATCAGTTTAAAATGTGACTGACACTGAAATGCTGTGATGTTCCCCAGACTGAG
GGGAAGCTGGGCTCTGGGGCCCCCAGTGCTTTGCCCCTCTGTCTGTCTGCCCTGTCCTGG
GATGATGGACAAACAGATGACTACATGGCAGGAGAATCCATGATTGGAAGCCTCCAGGCT
GAGCCCTTCTGGGCCTGGCCCTGCATCCCTCACATCTGCAGCCTGGGCTGCCTGCCTCCA
TCTCCTGCTCTTTCTCAGCTGACCTCAGTAGTACCAGGAGCCAGTGGGGAGCCTGGGGGG
CCTAGAACTTTCAAGAAGTGAGAGCACCAACCTGAGGAGTGGAGAGGGACCAGGAAGGGG
AGAAGGGAGGCCAAGAAAAGATGGATAAAAGAGACACTTCTGATCTCATCTTGGACCTTA
GAGGGGTCCACGGGTGGGGACCCAAGGCCCAGCTGGCTCACTGGATGGCCAGGGCAAGTA
ACAGCCTCTCTGTGCTGCATTTGAGGGCACAGTGAGAGTTAGCCCTGGCTCCCAGGGCCT
ACATGAGTTACATGTGAGTGAACAGGGGTGAGCTAA
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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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652-769, + strand, RNAmicro p=0.970717 |
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911-990, + strand, RNAmicro p=0.964859 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
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652-769, + strand, RNAmicro p=0.970717 |
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911-990, + strand, RNAmicro p=0.964859 |
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773-940, 433872 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI538511.1|),
blast E-value=1.4013e-45, identity=89.88% |
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773-940, 433883 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI538517.1|),
blast E-value=1.4013e-45, identity=89.88% |
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773-940, 958446 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK770295.1|),
blast E-value=0, identity=90.48% |
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773-912, BovGen_03969 normal cattle brain Bos taurus cDNA clone
(gb|CO875644.1|), blast E-value=2e-38, identity=90.71% |
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773-940, BovGen_20964 normal cattle brain Bos taurus cDNA clone
(gb|CO892639.1|), blast E-value=0, identity=90.48% |
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773-940, BovGen_25123 normal cattle brain Bos taurus cDNA clone
(gb|CO896798.1|), blast E-value=0, identity=90.48% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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773-940, 433872 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI538511.1|),
blast E-value=1.4013e-45, identity=89.88% |
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773-940, 433883 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI538517.1|),
blast E-value=1.4013e-45, identity=89.88% |
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773-940, 958446 MARC 1BOV Bos taurus cDNA 3', mRNA sequence (gb|CK770295.1|),
blast E-value=0, identity=90.48% |
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773-912, BovGen_03969 normal cattle brain Bos taurus cDNA clone
(gb|CO875644.1|), blast E-value=2e-38, identity=90.71% |
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773-940, BovGen_20964 normal cattle brain Bos taurus cDNA clone
(gb|CO892639.1|), blast E-value=0, identity=90.48% |
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773-940, BovGen_25123 normal cattle brain Bos taurus cDNA clone
(gb|CO896798.1|), blast E-value=0, identity=90.48% |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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ebs (0.236602) |
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ece (0.229305) |
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pty (0.142714) |
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cov (0.132153) |
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ebs (0.236602) |
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ece (0.229305) |
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pty (0.142714) |
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cov (0.132153) |