Non-Coding RNA Search

Ss1.1-Mixc-0028f11.3

Sequence:


               
               CTCACTGTTGCATGAATTCATCCGCTGCATCCAGTGGTAGACCGGGGTGGAGCACTTCTG
CTCCTCTGCCTCGCCGAACACGCTCTTGTCCTGCGCGCAGTCGGACTTCCGCGGCTCGGG
GTGGAACGGGGGCGGCTCGTCGGCGCCTGAGAGCGCGCAGGCCGACTCCTTCTCTCGGTA
GAAGGCCGGCGCCGGCCCGTAGTCGCAGGGCGCCGCTCGGCCGTAGCCGCCGCCGGCCGG
CGGGTAGTAGGAGGAAGCGGCAAAGCCCTTGTCCTGGCCGGGCCCCGGCCCGTAGGGCGC
GGGGTAGTGCCTCAGCGGGTCCGCATAGCCCGACGAGTAGAGCGGGAGCTGGCCCAGGAA
GGACTCCTGCCCGCTGGCCAGAGTGACGGGGAAGGTGGAGTTCACGAAATAGGAACTCAT
TGGGAGGGGAGGCGCGCACGGCCGCTGCTGCTCCGCCGGGTTTATGATTTGTTGTGTTTT
ATAGTCCGAGCGCCGCGCCTATTAGTAGTATATCTGAGATTGGGTTTTAGCTGAGGGGGG
ATGGCGAGGTGCCAGTGAGGGCCAGAAGGAAATACAACCATCTGATCCAACACTGACCAA
TGGCAGAAGCAGGAATTGGCAAATAGCACCCAGGAGGAGCGCAGCCCGCGCGAGGGACCC
GCGCACAAACCTATCAACCTTTTTTTCCCCCTCCTTCTTCTCCTTTGGCGGATCTCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCACTGTTGCATGAATTCATCCGCTGCATCCAGTGGTAGACCGGGGTGGAGCACTTCTG
CTCCTCTGCCTCGCCGAACACGCTCTTGTCCTGCGCGCAGTCGGACTTCCGCGGCTCGGG
GTGGAACGGGGGCGGCTCGTCGGCGCCTGAGAGCGCGCAGGCCGACTCCTTCTCTCGGTA
GAAGGCCGGCGCCGGCCCGTAGTCGCAGGGCGCCGCTCGGCCGTAGCCGCCGCCGGCCGG
CGGGTAGTAGGAGGAAGCGGCAAAGCCCTTGTCCTGGCCGGGCCCCGGCCCGTAGGGCGC
GGGGTAGTGCCTCAGCGGGTCCGCATAGCCCGACGAGTAGAGCGGGAGCTGGCCCAGGAA
GGACTCCTGCCCGCTGGCCAGAGTGACGGGGAAGGTGGAGTTCACGAAATAGGAACTCAT
TGGGAGGGGAGGCGCGCACGGCCGCTGCTGCTCCGCCGGGTTTATGATTTGTTGTGTTTT
ATAGTCCGAGCGCCGCGCCTATTAGTAGTATATCTGAGATTGGGTTTTAGCTGAGGGGGG
ATGGCGAGGTGCCAGTGAGGGCCAGAAGGAAATACAACCATCTGATCCAACACTGACCAA
TGGCAGAAGCAGGAATTGGCAAATAGCACCCAGGAGGAGCGCAGCCCGCGCGAGGGACCC
GCGCACAAACCTATCAACCTTTTTTTCCCCCTCCTTCTTCTCCTTTGGCGGATCTCTATC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               O46476_FELCA

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               O46476_FELCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               520-639, + strand, RNAz p=0.901671

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               520-639, + strand, RNAz p=0.901671

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-706, gnl|bosTau2|chr19 (31215453-31216157)
               

               
               1-706, gnl|Hg17|chr17 (44030092-44030801)
               

               
               1-706, gnl|Mm7|chr11 (96408635-96407904)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-706, gnl|bosTau2|chr19 (31215453-31216157)
               

               
               1-706, gnl|Hg17|chr17 (44030092-44030801)
               

               
               1-706, gnl|Mm7|chr11 (96408635-96407904)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               clu (0.119646)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)

	1-706, gnl\|bosTau2\|chr19 (31215453-31216157)
	1-706, gnl\|Hg17\|chr17 (44030092-44030801)
	1-706, gnl\|Mm7\|chr11 (96408635-96407904)