Ss1.1-Mixc-0028g14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTTCTCTCCACGCCCCTCTCTGTGCTTATAGCCTCCATGGCTCCGAAAAAGCCAGAGC CCAAGAAGGATGATGCCAAGGCAGCTGCTAAGGCGGCTCCAGCTCCTGCACCTGCGCCCG CACCTGCACCTGAACCCCCCAAGGAACCTGAGTTTGATGCCTCCAAGATCAAGATCGAAT TTACACCGGAGCAGATTGAAGAGTTCAAGGAAGCCTTCATGCTGTTTGACCGTACACCCA AGTGTGAGATGAAGATCACGTACGGGCAGTGTGGGGATGTCCTGCGGGCACTGGGCCAGA ACCCCACGCAGGCCGAGGTGCTCCGTGTCCTGGGGAAGCCAAAGCAGGAAGAGCTTAACT CCAAGATGATGGACTTTGACACGTTCCTGCCCATGCTCCAGCACATCTCCAAGAACAAGG ACACGGGCACCTATGAGGACTTTGTGGAAGGGCTGCGCGTCTTCGACAAGGAGGGCAATG GCACGGTCATGGGTGCTGAGCTCCGCCACGTGCTGGCCACACTGGGTGAGAGGCTGACAG AAGACGAGGTAGAGAAGTTGATGGCTGGGCAAGAGGACTCCAATGGCTGCATCAACTATG AAGCATTTGTCAAGCACATCATGGCCAGCTGAACCTCTCACCCCAGGGAGCCCAGGGGAG GCCATGCTGGGGACAGTTCATCTCCCATGGGTGATGCGGACACCAGTGGCCTGGCGTTGT GGGATGGAGGGGAGCACACCAAGACTCTTGCACATGCTCTCTCTGCACAGCCCTGCAGAC CACTCTGCAGGGCTGTCGTCTCTGCCCCCATCTGGCTACACCTGCCTGTGACTGCCTCTC TGTCCCCACCCCTTGGGCCCCATGAATAAATGACTTCTTCCCTTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTTCTCTCCACGCCCCTCTCTGTGCTTATAGCCTCCATGGCTCCGAAAAAGCCAGAGC CCAAGAAGGATGATGCCAAGGCAGCTGCTAAGGCGGCTCCAGCTCCTGCACCTGCGCCCG CACCTGCACCTGAACCCCCCAAGGAACCTGAGTTTGATGCCTCCAAGATCAAGATCGAAT TTACACCGGAGCAGATTGAAGAGTTCAAGGAAGCCTTCATGCTGTTTGACCGTACACCCA AGTGTGAGATGAAGATCACGTACGGGCAGTGTGGGGATGTCCTGCGGGCACTGGGCCAGA ACCCCACGCAGGCCGAGGTGCTCCGTGTCCTGGGGAAGCCAAAGCAGGAAGAGCTTAACT CCAAGATGATGGACTTTGACACGTTCCTGCCCATGCTCCAGCACATCTCCAAGAACAAGG ACACGGGCACCTATGAGGACTTTGTGGAAGGGCTGCGCGTCTTCGACAAGGAGGGCAATG GCACGGTCATGGGTGCTGAGCTCCGCCACGTGCTGGCCACACTGGGTGAGAGGCTGACAG AAGACGAGGTAGAGAAGTTGATGGCTGGGCAAGAGGACTCCAATGGCTGCATCAACTATG AAGCATTTGTCAAGCACATCATGGCCAGCTGAACCTCTCACCCCAGGGAGCCCAGGGGAG GCCATGCTGGGGACAGTTCATCTCCCATGGGTGATGCGGACACCAGTGGCCTGGCGTTGT GGGATGGAGGGGAGCACACCAAGACTCTTGCACATGCTCTCTCTGCACAGCCCTGCAGAC CACTCTGCAGGGCTGTCGTCTCTGCCCCCATCTGGCTACACCTGCCTGTGACTGCCTCTC TGTCCCCACCCCTTGGGCCCCATGAATAAATGACTTCTTCCCTTAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 768-884, - strand, RNAz p=0.999744 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 768-884, - strand, RNAz p=0.999744 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 3-173, gnl|bosTau2|chr3 (78882446-78882270) | |
| 3-173, gnl|Hg17|chr3 (46879921-46879756) | |
| 3-173, gnl|Mm7|chr9 (110461411-110461602) | |
| 200-351, gnl|bosTau2|chr3 (78879705-78879554) | |
| 200-351, gnl|canFam2|chr20 (44943394-44943300) | |
| 200-351, gnl|danRer3|chr3 (15203195-15203101) | |
| 200-351, gnl|dasNov1|scaffold_109743 (2709-2624) | |
| 200-351, gnl|echTel1|scaffold_301391 (4332-4238) | |
| 200-351, gnl|fr1|chrUn (137013836-137013742) | |
| 200-351, gnl|galGal2|chr27 (1288451-1288357) | |
| 200-351, gnl|hg17|chr3 (46877169-46877263) | |
| 200-351, gnl|Hg17|chr3 (46877321-46877170) | |
| 200-351, gnl|loxAfr1|scaffold_38552 (18487-18393) | |
| 200-351, gnl|mm7|chr9 (110464475-110464381) | |
| 200-351, gnl|Mm7|chr9 (110464321-110464472) | |
| 200-351, gnl|monDom2|scaffold_5 (80850564-80850658) | |
| 200-351, gnl|oryCun1|scaffold_185462 (7199-7293) | |
| 200-351, gnl|panTro1|chr2 (48316283-48316377) | |
| 200-351, gnl|rheMac2|chr2 (89679616-89679522) | |
| 200-351, gnl|rn3|chr8 (115163170-115163076) | |
| 200-351, gnl|tetNig1|chr15_random (1233710-1233616) | |
| 200-351, gnl|xenTro1|scaffold_221 (1522363-1522457) | |
| 644-884, gnl|bosTau2|chr22 (41355813-41355574) | |
| 644-884, gnl|canFam2|chr20 (44946097-44945890) | |
| 644-884, gnl|hg17|chr3 (46874337-46874569) | |
| 644-884, gnl|Hg17|chr3 (46874598-46874372) | |
| 644-884, gnl|mm7|chr9 (110467485-110467309) | |
| 644-884, gnl|Mm7|chr9 (110467284-110467495) | |
| 644-884, gnl|oryCun1|scaffold_206213 (13857-14076) | |
| 644-884, gnl|panTro1|chr2 (48313435-48313667) | |
| 644-884, gnl|rheMac2|chr2 (89682460-89682228) | |
| 644-884, gnl|rn3|chr8 (115166278-115166074) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-173, gnl|bosTau2|chr3 (78882446-78882270) | |
| 3-173, gnl|Hg17|chr3 (46879921-46879756) | |
| 3-173, gnl|Mm7|chr9 (110461411-110461602) | |
| 200-351, gnl|bosTau2|chr3 (78879705-78879554) | |
| 200-351, gnl|canFam2|chr20 (44943394-44943300) | |
| 200-351, gnl|danRer3|chr3 (15203195-15203101) | |
| 200-351, gnl|dasNov1|scaffold_109743 (2709-2624) | |
| 200-351, gnl|echTel1|scaffold_301391 (4332-4238) | |
| 200-351, gnl|fr1|chrUn (137013836-137013742) | |
| 200-351, gnl|galGal2|chr27 (1288451-1288357) | |
| 200-351, gnl|hg17|chr3 (46877169-46877263) | |
| 200-351, gnl|Hg17|chr3 (46877321-46877170) | |
| 200-351, gnl|loxAfr1|scaffold_38552 (18487-18393) | |
| 200-351, gnl|mm7|chr9 (110464475-110464381) | |
| 200-351, gnl|Mm7|chr9 (110464321-110464472) | |
| 200-351, gnl|monDom2|scaffold_5 (80850564-80850658) | |
| 200-351, gnl|oryCun1|scaffold_185462 (7199-7293) | |
| 200-351, gnl|panTro1|chr2 (48316283-48316377) | |
| 200-351, gnl|rheMac2|chr2 (89679616-89679522) | |
| 200-351, gnl|rn3|chr8 (115163170-115163076) | |
| 200-351, gnl|tetNig1|chr15_random (1233710-1233616) | |
| 200-351, gnl|xenTro1|scaffold_221 (1522363-1522457) | |
| 644-884, gnl|bosTau2|chr22 (41355813-41355574) | |
| 644-884, gnl|canFam2|chr20 (44946097-44945890) | |
| 644-884, gnl|hg17|chr3 (46874337-46874569) | |
| 644-884, gnl|Hg17|chr3 (46874598-46874372) | |
| 644-884, gnl|mm7|chr9 (110467485-110467309) | |
| 644-884, gnl|Mm7|chr9 (110467284-110467495) | |
| 644-884, gnl|oryCun1|scaffold_206213 (13857-14076) | |
| 644-884, gnl|panTro1|chr2 (48313435-48313667) | |
| 644-884, gnl|rheMac2|chr2 (89682460-89682228) | |
| 644-884, gnl|rn3|chr8 (115166278-115166074) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| hlv (13.5079) | |
| mas (7.15037) | |
| che (2.18103) | |
| ese (1.26502) | |
| nep (0.919625) | |
| ssp (0.813118) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ldo (0.291008) | |
| nca (0.273748) | |
| eru (0.240096) | |
| ton (0.1755) | |
| eye (0.170503) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| jca (0.11396) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (13.5079) | |
| mas (7.15037) | |
| che (2.18103) | |
| ese (1.26502) | |
| nep (0.919625) | |
| ssp (0.813118) | |
| nms (0.427716) | |
| hea (0.408998) | |
| ldo (0.291008) | |
| nca (0.273748) | |
| eru (0.240096) | |
| ton (0.1755) | |
| eye (0.170503) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| jca (0.11396) |