Ss1.1-Mixc-0028h13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGCCTCAGAGGCTGACCGCTGTTCCAGCGCCACCCCCGGATAGTTTTTCCTAGGATTG GCGGCTCGGGGTTCTCGATCAGGGACCAGAGAGCCGAAACCTCGAGGGCGGCTTCCGCGG GACCTAGAGACCCTCATCCCGGGGGAGTCGAAAAGGACGAGGATCCGACCAGATTTCTAC CATTGCGCATCGCCCATGGCGGCCCTCGGCCCCTGCAGCCAGAATGTCACTGAATATGTT GTCCGAGTTCCCAAAAATACCACCAAAAAATATAATATCATGGCCTTCAATGCAGCTGAT AAAGTCAATCTTGCTACTTGGAATCAGGCCCGGCTGGAACGTGACCTGAGTAACAAGAAG ATTTACCAAGAGGAGGAGATGCCAGAATCAGGCGCTGGCAGTGAGTTCAACCGCAAGCTC CGGGAGGAGGCCCGGAGGAAGAAGTACGGCATCGTCCTGAAGGAGTTCCGGCCGGAGGAC CAGCCCTGGCTGCTCCGCATCAATGGCAAGGCAGGCCGGAAGTTCAAGGGCATAAAGAAG GGAGGCGTGACAGAAAACACATCCTACTACATCTTTACCCAGTGCCCCGATGGGGCCTTT GAGGCCTTCCCCGTGCACAACTGGTACAACTTCACACCGCTGGCCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGCCTCAGAGGCTGACCGCTGTTCCAGCGCCACCCCCGGATAGTTTTTCCTAGGATTG GCGGCTCGGGGTTCTCGATCAGGGACCAGAGAGCCGAAACCTCGAGGGCGGCTTCCGCGG GACCTAGAGACCCTCATCCCGGGGGAGTCGAAAAGGACGAGGATCCGACCAGATTTCTAC CATTGCGCATCGCCCATGGCGGCCCTCGGCCCCTGCAGCCAGAATGTCACTGAATATGTT GTCCGAGTTCCCAAAAATACCACCAAAAAATATAATATCATGGCCTTCAATGCAGCTGAT AAAGTCAATCTTGCTACTTGGAATCAGGCCCGGCTGGAACGTGACCTGAGTAACAAGAAG ATTTACCAAGAGGAGGAGATGCCAGAATCAGGCGCTGGCAGTGAGTTCAACCGCAAGCTC CGGGAGGAGGCCCGGAGGAAGAAGTACGGCATCGTCCTGAAGGAGTTCCGGCCGGAGGAC CAGCCCTGGCTGCTCCGCATCAATGGCAAGGCAGGCCGGAAGTTCAAGGGCATAAAGAAG GGAGGCGTGACAGAAAACACATCCTACTACATCTTTACCCAGTGCCCCGATGGGGCCTTT GAGGCCTTCCCCGTGCACAACTGGTACAACTTCACACCGCTGGCCCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 364-483, + strand, RNAz p=0.546685 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 364-483, + strand, RNAz p=0.546685 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 13-206, gnl|bosTau2|chr7 (13971938-13972140) | |
| 13-206, gnl|canFam2|chr20 (56716575-56716463) | |
| 13-206, gnl|echTel1|scaffold_62945 (1161-1328) | |
| 13-206, gnl|hg17|chr19 (6343989-6344138) | |
| 13-206, gnl|Hg17|chr19 (6344188-6343996) | |
| 13-206, gnl|loxAfr1|scaffold_3490 (105189-105024) | |
| 13-206, gnl|mm7|chr17 (55222238-55222387) | |
| 13-206, gnl|monDom2|scaffold_85 (4728937-4729077) | |
| 13-206, gnl|oryCun1|scaffold_76581 (426-562) | |
| 13-206, gnl|panTro1|chr20 (6702860-6703009) | |
| 13-206, gnl|rheMac2|chr19 (6297800-6297949) | |
| 13-206, gnl|rn3|chrUn (24752857-24752712) | |
| 325-523, gnl|bosTau2|chr7 (13974050-13974248) | |
| 325-523, gnl|canFam2|chr20 (56720722-56720561) | |
| 325-523, gnl|danRer3|chr3 (31709310-31709153) | |
| 325-523, gnl|dasNov1|scaffold_24480 (6663-6799) | |
| 325-523, gnl|fr1|chrUn (157574721-157574883) | |
| 325-523, gnl|hg17|chr19 (6340447-6340610) | |
| 325-523, gnl|Hg17|chr19 (6340651-6340453) | |
| 325-523, gnl|loxAfr1|scaffold_98792 (908-747) | |
| 325-523, gnl|mm7|chr17 (55218835-55218998) | |
| 325-523, gnl|Mm7|chr17 (55219039-55218841) | |
| 325-523, gnl|monDom2|scaffold_85 (4679187-4679350) | |
| 325-523, gnl|panTro1|chr20 (6699320-6699483) | |
| 325-523, gnl|rheMac2|chr19 (6293379-6293542) | |
| 325-523, gnl|rn3|chrUn (24756077-24755914) | |
| 325-523, gnl|tetNig1|chr3 (8237268-8237426) | |
| 325-523, gnl|xenTro1|scaffold_781 (257934-258094) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-206, gnl|bosTau2|chr7 (13971938-13972140) | |
| 13-206, gnl|canFam2|chr20 (56716575-56716463) | |
| 13-206, gnl|echTel1|scaffold_62945 (1161-1328) | |
| 13-206, gnl|hg17|chr19 (6343989-6344138) | |
| 13-206, gnl|Hg17|chr19 (6344188-6343996) | |
| 13-206, gnl|loxAfr1|scaffold_3490 (105189-105024) | |
| 13-206, gnl|mm7|chr17 (55222238-55222387) | |
| 13-206, gnl|monDom2|scaffold_85 (4728937-4729077) | |
| 13-206, gnl|oryCun1|scaffold_76581 (426-562) | |
| 13-206, gnl|panTro1|chr20 (6702860-6703009) | |
| 13-206, gnl|rheMac2|chr19 (6297800-6297949) | |
| 13-206, gnl|rn3|chrUn (24752857-24752712) | |
| 325-523, gnl|bosTau2|chr7 (13974050-13974248) | |
| 325-523, gnl|canFam2|chr20 (56720722-56720561) | |
| 325-523, gnl|danRer3|chr3 (31709310-31709153) | |
| 325-523, gnl|dasNov1|scaffold_24480 (6663-6799) | |
| 325-523, gnl|fr1|chrUn (157574721-157574883) | |
| 325-523, gnl|hg17|chr19 (6340447-6340610) | |
| 325-523, gnl|Hg17|chr19 (6340651-6340453) | |
| 325-523, gnl|loxAfr1|scaffold_98792 (908-747) | |
| 325-523, gnl|mm7|chr17 (55218835-55218998) | |
| 325-523, gnl|Mm7|chr17 (55219039-55218841) | |
| 325-523, gnl|monDom2|scaffold_85 (4679187-4679350) | |
| 325-523, gnl|panTro1|chr20 (6699320-6699483) | |
| 325-523, gnl|rheMac2|chr19 (6293379-6293542) | |
| 325-523, gnl|rn3|chrUn (24756077-24755914) | |
| 325-523, gnl|tetNig1|chr3 (8237268-8237426) | |
| 325-523, gnl|xenTro1|scaffold_781 (257934-258094) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| ebs (0.118301) |