Non-Coding RNA Search

Ss1.1-Mixc-0028i06.3

Sequence:


               
               CCCAGACCAAAGCCCTGAAGGTCCGTGTGACCCTCTTCTGCATCCTGGTGGGCATCGTGC
TGGCCTTGGTGGCCGTGGTGACCGACCACTGGGCCGTGCTGAGCCCCCACGTGGAGCACC
TCAATGCCACCTGCGAGGCGGCCCACTTCGGCCTCTGGCGGATTTGCACCAAGCGGATCG
CCGTGGGCGACAGCAAGGACAAGAGCTGCGGACCCATCACCCTGCCTGGGGAGAAAAACT
GTTCCTACTTCAGGCATTTTAACCCGGGCGAGACCTCAGAGATCTTCCACGTCACCACTC
AGAAAGAGTACAGCATCTCGGCGGCCGCCATCGCCATCTTCAGCCTCGGCTTCATCATCC
TGGGAACCATCTGCGGGCTCCTGTCCTTCAGGAAGAAGCGGGATTACCTGCTGAGGCCGG
CGTCCATGTTCTACGCCTTCGCAGGTCTCTGCATCTTCGTCTCCGTGGAGGTCATGCGCC
AGTCGGTGAAGCGCATGATCGACAGCGAGGACACCGTCTGGATCGACTACTATTACGGCT
GGTCCTTCGCCTGCGCCTGCGCCGCCTTCATCCTCCTCTTCCTCGGCGGCATCGCCCTCC
TGCTCTTCTCCCTTCCTCGAATGCCCCAGTACCCCTGGGAGTCCTGCATGGACGCCGAGC
CCGAGCACTAGCCCTCCTGGGGCCCCAGAGAGCCTCGGGACTTTCCCTTCAGGAAGCTGA
GCCCAGCCGAGAACATTCTAGAAAAGGGGGGGGGGCTTTACTTCTCCCCTGCTCCCACCT
GGCCCCCTGCAGCCGCCGCTGCTGCTTTCCCTGCCAGAGCTCTCCTCCGGGCTGTGACGG
GCACCTCTGGGAATCCAGAGAGTGGACCTGGTCCAGACCTGCCCGAGGGGGGGCAGAGGC
AGGGCCAGCAGGTGCACAGGTGTTCAAAGGAGGGCCCCGACCTTTCTCTGGGGTTCTAGG
CTGTCCCCGTGGGCTCAGGCTCCTTGATCGGCTGGCTCCCCTTGTCCTCTGTAGCCCCTT
TACCAGTTCCGGGTGTCCACCTGTGTAAATAGCCAGCCCCTCTGTCCTTCTTGGTGACAA
GATACCCCCTTCCCCGGTGACCTGAACCTTCCCTCTTTGGCTTCTGGGAGACCTGAGAAG
CATTTTTTAACTGGGTAGAATCTGACGGTGGTTTGAAATAAAAACTCTCTAGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACCAAAGCCCTGAAGGTCCGTGTGACCCTCTTCTGCATCCTGGTGGGCATCGTGC
TGGCCTTGGTGGCCGTGGTGACCGACCACTGGGCCGTGCTGAGCCCCCACGTGGAGCACC
TCAATGCCACCTGCGAGGCGGCCCACTTCGGCCTCTGGCGGATTTGCACCAAGCGGATCG
CCGTGGGCGACAGCAAGGACAAGAGCTGCGGACCCATCACCCTGCCTGGGGAGAAAAACT
GTTCCTACTTCAGGCATTTTAACCCGGGCGAGACCTCAGAGATCTTCCACGTCACCACTC
AGAAAGAGTACAGCATCTCGGCGGCCGCCATCGCCATCTTCAGCCTCGGCTTCATCATCC
TGGGAACCATCTGCGGGCTCCTGTCCTTCAGGAAGAAGCGGGATTACCTGCTGAGGCCGG
CGTCCATGTTCTACGCCTTCGCAGGTCTCTGCATCTTCGTCTCCGTGGAGGTCATGCGCC
AGTCGGTGAAGCGCATGATCGACAGCGAGGACACCGTCTGGATCGACTACTATTACGGCT
GGTCCTTCGCCTGCGCCTGCGCCGCCTTCATCCTCCTCTTCCTCGGCGGCATCGCCCTCC
TGCTCTTCTCCCTTCCTCGAATGCCCCAGTACCCCTGGGAGTCCTGCATGGACGCCGAGC
CCGAGCACTAGCCCTCCTGGGGCCCCAGAGAGCCTCGGGACTTTCCCTTCAGGAAGCTGA
GCCCAGCCGAGAACATTCTAGAAAAGGGGGGGGGGCTTTACTTCTCCCCTGCTCCCACCT
GGCCCCCTGCAGCCGCCGCTGCTGCTTTCCCTGCCAGAGCTCTCCTCCGGGCTGTGACGG
GCACCTCTGGGAATCCAGAGAGTGGACCTGGTCCAGACCTGCCCGAGGGGGGGCAGAGGC
AGGGCCAGCAGGTGCACAGGTGTTCAAAGGAGGGCCCCGACCTTTCTCTGGGGTTCTAGG
CTGTCCCCGTGGGCTCAGGCTCCTTGATCGGCTGGCTCCCCTTGTCCTCTGTAGCCCCTT
TACCAGTTCCGGGTGTCCACCTGTGTAAATAGCCAGCCCCTCTGTCCTTCTTGGTGACAA
GATACCCCCTTCCCCGGTGACCTGAACCTTCCCTCTTTGGCTTCTGGGAGACCTGAGAAG
CATTTTTTAACTGGGTAGAATCTGACGGTGGTTTGAAATAAAAACTCTCTAGAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62728592|gb|AAX94777.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62728592|gb|AAX94777.1|

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               1-231, gnl|bosTau2|chr19 (50518754-50518981)
               

               
               1-231, gnl|canFam2|chr9 (16567468-16567175)
               

               
               1-231, gnl|danRer3|chrNA (3592974-3592716)
               

               
               1-231, gnl|echTel1|scaffold_322460 (4673-4940)
               

               
               1-231, gnl|fr1|chrUn (121027723-121027422)
               

               
               1-231, gnl|galGal2|chr18 (7026136-7025860)
               

               
               1-231, gnl|hg17|chr17 (62471208-62471495)
               

               
               1-231, gnl|Hg17|chr17 (62471243-62471467)
               

               
               1-231, gnl|loxAfr1|scaffold_21418 (30146-29864)
               

               
               1-231, gnl|mm7|chr11 (107825465-107825174)
               

               
               1-231, gnl|Mm7|chr11 (107825428-107825201)
               

               
               1-231, gnl|monDom2|scaffold_18 (18615437-18615151)
               

               
               1-231, gnl|oryCun1|scaffold_203833 (73604-73317)
               

               
               1-231, gnl|panTro1|chr19 (65741934-65742221)
               

               
               1-231, gnl|rheMac2|chr16 (62404024-62404311)
               

               
               1-231, gnl|rn3|chr10 (97132790-97132503)
               

               
               1-231, gnl|tetNig1|chr3 (8762735-8762457)
               


               
               442-675, gnl|bosTau2|chr19 (50526510-50526743)
               

               
               442-675, gnl|Hg17|chr17 (62482620-62482853)
               

               
               442-675, gnl|Mm7|chr11 (107812934-107812701)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-231, gnl|bosTau2|chr19 (50518754-50518981)
               

               
               1-231, gnl|canFam2|chr9 (16567468-16567175)
               

               
               1-231, gnl|danRer3|chrNA (3592974-3592716)
               

               
               1-231, gnl|echTel1|scaffold_322460 (4673-4940)
               

               
               1-231, gnl|fr1|chrUn (121027723-121027422)
               

               
               1-231, gnl|galGal2|chr18 (7026136-7025860)
               

               
               1-231, gnl|hg17|chr17 (62471208-62471495)
               

               
               1-231, gnl|Hg17|chr17 (62471243-62471467)
               

               
               1-231, gnl|loxAfr1|scaffold_21418 (30146-29864)
               

               
               1-231, gnl|mm7|chr11 (107825465-107825174)
               

               
               1-231, gnl|Mm7|chr11 (107825428-107825201)
               

               
               1-231, gnl|monDom2|scaffold_18 (18615437-18615151)
               

               
               1-231, gnl|oryCun1|scaffold_203833 (73604-73317)
               

               
               1-231, gnl|panTro1|chr19 (65741934-65742221)
               

               
               1-231, gnl|rheMac2|chr16 (62404024-62404311)
               

               
               1-231, gnl|rn3|chr10 (97132790-97132503)
               

               
               1-231, gnl|tetNig1|chr3 (8762735-8762457)
               


               
               442-675, gnl|bosTau2|chr19 (50526510-50526743)
               

               
               442-675, gnl|Hg17|chr17 (62482620-62482853)
               

               
               442-675, gnl|Mm7|chr11 (107812934-107812701)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               ese (0.126502)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ese (0.126502)

	1-231, gnl\|bosTau2\|chr19 (50518754-50518981)
	1-231, gnl\|canFam2\|chr9 (16567468-16567175)
	1-231, gnl\|danRer3\|chrNA (3592974-3592716)
	1-231, gnl\|echTel1\|scaffold_322460 (4673-4940)
	1-231, gnl\|fr1\|chrUn (121027723-121027422)
	1-231, gnl\|galGal2\|chr18 (7026136-7025860)
	1-231, gnl\|hg17\|chr17 (62471208-62471495)
	1-231, gnl\|Hg17\|chr17 (62471243-62471467)
	1-231, gnl\|loxAfr1\|scaffold_21418 (30146-29864)
	1-231, gnl\|mm7\|chr11 (107825465-107825174)
	1-231, gnl\|Mm7\|chr11 (107825428-107825201)
	1-231, gnl\|monDom2\|scaffold_18 (18615437-18615151)
	1-231, gnl\|oryCun1\|scaffold_203833 (73604-73317)
	1-231, gnl\|panTro1\|chr19 (65741934-65742221)
	1-231, gnl\|rheMac2\|chr16 (62404024-62404311)
	1-231, gnl\|rn3\|chr10 (97132790-97132503)
	1-231, gnl\|tetNig1\|chr3 (8762735-8762457)

	442-675, gnl\|bosTau2\|chr19 (50526510-50526743)
	442-675, gnl\|Hg17\|chr17 (62482620-62482853)
	442-675, gnl\|Mm7\|chr11 (107812934-107812701)