Non-Coding RNA Search

Ss1.1-Mixc-0028j15.5.5

Sequence:


               
               ACCCACAATTACTAAAATAAATAGTGTTCATGTTTATCACCTTGAAAACTAAGAAAGGTT
TTTCTCCTCCCACGCCCAGTTTAGGAAAATATCACATTGTGGGTTAGCGTCTTTGCTCGT
GATGGCCGCCGCCGTCGCTATGGAGACAGACACCGGCACCACTGGCTTCCGGCGAGAACG
AGAAAGAGAATTTCAATTTTAAACCAATCTTCGATGATGCTGGGAATCGACTTCGGTTTC
AATTGGAGTTGGAATTTGTGCAGTGTTTAGCCAACCCAAATTACCTTAATTTTCTTGCCC
AAAGAGGTTACTTCAAAGACAAAGCTTTTGTTAATTATCTTAAGTACTTGCTTTACTGGA
AAGAGCCAGAATATGCCAAGTATCTAAAGTACCCTCAGTGTTTACACATGTTAGAACTGC
TCCAATATGAACACTTCCGCAAGGAGCTGGTGAATGCTCAATGTGCAAAATTCATTGATG
AGCAGCAAATTCTGCATTGGCAGCACTATTCCCGGAAGCGGATGCGCCTTCAGCAAGCCC
TGGCAGAGCAGCAACAGCAAAATAACACATCAGGAAAGTGAAAAGCTGATCCAGACCAGG
CTCTTACGACATGTATATATTGCTTTTGTACATGAAGACAGAAAAAGACTCTTGCTCCGA
ACCTTTATTGTGACAGCACCCAGAACCGATAGTGTGCTATTTAATTGAACTAATTTTTTA
TTCTCAATAGATTATTTCTTTTAAACTAGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCACAATTACTAAAATAAATAGTGTTCATGTTTATCACCTTGAAAACTAAGAAAGGTT
TTTCTCCTCCCACGCCCAGTTTAGGAAAATATCACATTGTGGGTTAGCGTCTTTGCTCGT
GATGGCCGCCGCCGTCGCTATGGAGACAGACACCGGCACCACTGGCTTCCGGCGAGAACG
AGAAAGAGAATTTCAATTTTAAACCAATCTTCGATGATGCTGGGAATCGACTTCGGTTTC
AATTGGAGTTGGAATTTGTGCAGTGTTTAGCCAACCCAAATTACCTTAATTTTCTTGCCC
AAAGAGGTTACTTCAAAGACAAAGCTTTTGTTAATTATCTTAAGTACTTGCTTTACTGGA
AAGAGCCAGAATATGCCAAGTATCTAAAGTACCCTCAGTGTTTACACATGTTAGAACTGC
TCCAATATGAACACTTCCGCAAGGAGCTGGTGAATGCTCAATGTGCAAAATTCATTGATG
AGCAGCAAATTCTGCATTGGCAGCACTATTCCCGGAAGCGGATGCGCCTTCAGCAAGCCC
TGGCAGAGCAGCAACAGCAAAATAACACATCAGGAAAGTGAAAAGCTGATCCAGACCAGG
CTCTTACGACATGTATATATTGCTTTTGTACATGAAGACAGAAAAAGACTCTTGCTCCGA
ACCTTTATTGTGACAGCACCCAGAACCGATAGTGTGCTATTTAATTGAACTAATTTTTTA
TTCTCAATAGATTATTTCTTTTAAACTAGAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15214807|gb|AAH12539.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15214807|gb|AAH12539.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               389-507, + strand, RNAz p=0.688411

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               389-507, + strand, RNAz p=0.688411

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016060, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016060, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               389-751, gnl|bosTau2|chr19 (19822875-19823235)
               

               
               389-751, gnl|Hg17|chr17 (6488703-6488333)
               

               
               389-751, gnl|Mm7|chr11 (72293651-72293292)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               389-751, gnl|bosTau2|chr19 (19822875-19823235)
               

               
               389-751, gnl|Hg17|chr17 (6488703-6488333)
               

               
               389-751, gnl|Mm7|chr11 (72293651-72293292)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               cbe (0.717703)
               

               
               hea (0.613497)
               

               
               gul (0.355177)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               hea (0.613497)
               

               
               gul (0.355177)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               thg (0.253582)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)

	389-751, gnl\|bosTau2\|chr19 (19822875-19823235)
	389-751, gnl\|Hg17\|chr17 (6488703-6488333)
	389-751, gnl\|Mm7\|chr11 (72293651-72293292)

	cbe (0.717703)
	hea (0.613497)
	gul (0.355177)
	cte (0.29274)
	csk (0.281492)
	thg (0.253582)
	tes (0.207814)
	fcc (0.197785)
	ldo (0.194005)
	mgm (0.180343)
	mcp (0.170648)
	cut (0.169924)
	fhi (0.169578)
	fco (0.157208)
	eli (0.151814)
	lun (0.150489)
	ski (0.146735)
	nca (0.136874)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	sug (0.127291)
	tra (0.123092)
	eep (0.122564)
	pgl (0.118483)