Non-Coding RNA Search

Ss1.1-Mixc-0028j23.3

Sequence:


               
               CCACGCTGACCTTCCGGGCGCTCCGGCACGCGCTCTGTCGCCTGGCCCTACCGGCGCACG
TGCGCGCCGACCCCCTGCGCACCTGGCGCTGGCACAACCTGCTCGTCTCCTTCGCCCATT
CCATTGTGTCAGGGACCTGGGCGCTGCTGTGTATATGGCAGACCCCGGAGATGCTGGTAG
AGATTGAAACAGCATGGTCGCTTTCTGGCTATCTGCTCGTTTGTTTCTCTGCAGGGTATT
TCATCCACGACACGGTGGATATCGTGGTTAGTCATCAATCACGGGCTTCTTGGGAATACC
TTGTCCATCACGTCATGGCCATGGGTGCCTTCTTTTCAGGCATCTTTTGGAGCAGATTTG
TTGGTGGCGGTGTCCTAACCCTGCTGGTGGAGGTCAGCAACATCTTCCTCACGATACGCA
TGATGATGAAAATCAGTAACGCCCAAGATCTCCTCCTCTATCGGGTCAACAAATACATCA
ACTTGGTCATGTATCTTCTCTTCCGCCTAGCCCCTCAGGCCTACCTCAACCTATCTCTTC
CTGGGTTATGCTGGCCAAAGGACCTGGGAACCTTTCTGCTGAGCATCCCCTGCTCATGCT
ATGTCATGATCCTCATCTATTTTTCCCGCCTCCTCCGCTCTGACTTCTGCCCTGAGCAGA
TACCCAGGCAGAAACACAAGGACAAGTTCTTGACCGAGTGAAAAGCACAGACCCAGGGAC
TTGTGACAAAAAACAGCCTCACATATAAACTGAGACTTCAGCCCTCACCTGAGGCGTCCT
CTGGGGCCATGCTCTCCACCTTTCACATCTGCACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCTGACCTTCCGGGCGCTCCGGCACGCGCTCTGTCGCCTGGCCCTACCGGCGCACG
TGCGCGCCGACCCCCTGCGCACCTGGCGCTGGCACAACCTGCTCGTCTCCTTCGCCCATT
CCATTGTGTCAGGGACCTGGGCGCTGCTGTGTATATGGCAGACCCCGGAGATGCTGGTAG
AGATTGAAACAGCATGGTCGCTTTCTGGCTATCTGCTCGTTTGTTTCTCTGCAGGGTATT
TCATCCACGACACGGTGGATATCGTGGTTAGTCATCAATCACGGGCTTCTTGGGAATACC
TTGTCCATCACGTCATGGCCATGGGTGCCTTCTTTTCAGGCATCTTTTGGAGCAGATTTG
TTGGTGGCGGTGTCCTAACCCTGCTGGTGGAGGTCAGCAACATCTTCCTCACGATACGCA
TGATGATGAAAATCAGTAACGCCCAAGATCTCCTCCTCTATCGGGTCAACAAATACATCA
ACTTGGTCATGTATCTTCTCTTCCGCCTAGCCCCTCAGGCCTACCTCAACCTATCTCTTC
CTGGGTTATGCTGGCCAAAGGACCTGGGAACCTTTCTGCTGAGCATCCCCTGCTCATGCT
ATGTCATGATCCTCATCTATTTTTCCCGCCTCCTCCGCTCTGACTTCTGCCCTGAGCAGA
TACCCAGGCAGAAACACAAGGACAAGTTCTTGACCGAGTGAAAAGCACAGACCCAGGGAC
TTGTGACAAAAAACAGCCTCACATATAAACTGAGACTTCAGCCCTCACCTGAGGCGTCCT
CTGGGGCCATGCTCTCCACCTTTCACATCTGCACCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19923999|ref|NP_612472.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19923999|ref|NP_612472.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               356-475, - strand, RNAz p=0.601277

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               356-475, - strand, RNAz p=0.601277

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-107, gnl|bosTau2|chr19 (13691511-13691405)
               

               
               1-107, gnl|canFam2|chr9 (46246464-46246612)
               

               
               1-107, gnl|dasNov1|scaffold_5542 (52804-52656)
               

               
               1-107, gnl|echTel1|scaffold_317923 (161417-161565)
               

               
               1-107, gnl|fr1|chrUn (15558543-15558693)
               

               
               1-107, gnl|hg17|chr17 (24077094-24077242)
               

               
               1-107, gnl|Hg17|chr17 (24077199-24077093)
               

               
               1-107, gnl|mm7|chr11 (78260588-78260440)
               

               
               1-107, gnl|monDom2|scaffold_44 (14668171-14668316)
               

               
               1-107, gnl|oryCun1|scaffold_76397 (355-207)
               

               
               1-107, gnl|panTro1|chr19 (27419277-27419425)
               

               
               1-107, gnl|rheMac2|chr16 (23931163-23931311)
               

               
               1-107, gnl|rn3|chr10 (64470152-64470300)
               

               
               1-107, gnl|tetNig1|chr16 (3976164-3976033)
               


               
               317-729, gnl|bosTau2|chr19 (13690629-13690220)
               

               
               317-729, gnl|Hg17|chr17 (24076039-24075634)
               

               
               317-729, gnl|Mm7|chr11 (78261521-78261932)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-107, gnl|bosTau2|chr19 (13691511-13691405)
               

               
               1-107, gnl|canFam2|chr9 (46246464-46246612)
               

               
               1-107, gnl|dasNov1|scaffold_5542 (52804-52656)
               

               
               1-107, gnl|echTel1|scaffold_317923 (161417-161565)
               

               
               1-107, gnl|fr1|chrUn (15558543-15558693)
               

               
               1-107, gnl|hg17|chr17 (24077094-24077242)
               

               
               1-107, gnl|Hg17|chr17 (24077199-24077093)
               

               
               1-107, gnl|mm7|chr11 (78260588-78260440)
               

               
               1-107, gnl|monDom2|scaffold_44 (14668171-14668316)
               

               
               1-107, gnl|oryCun1|scaffold_76397 (355-207)
               

               
               1-107, gnl|panTro1|chr19 (27419277-27419425)
               

               
               1-107, gnl|rheMac2|chr16 (23931163-23931311)
               

               
               1-107, gnl|rn3|chr10 (64470152-64470300)
               

               
               1-107, gnl|tetNig1|chr16 (3976164-3976033)
               


               
               317-729, gnl|bosTau2|chr19 (13690629-13690220)
               

               
               317-729, gnl|Hg17|chr17 (24076039-24075634)
               

               
               317-729, gnl|Mm7|chr11 (78261521-78261932)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nje (0.16592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	1-107, gnl\|bosTau2\|chr19 (13691511-13691405)
	1-107, gnl\|canFam2\|chr9 (46246464-46246612)
	1-107, gnl\|dasNov1\|scaffold_5542 (52804-52656)
	1-107, gnl\|echTel1\|scaffold_317923 (161417-161565)
	1-107, gnl\|fr1\|chrUn (15558543-15558693)
	1-107, gnl\|hg17\|chr17 (24077094-24077242)
	1-107, gnl\|Hg17\|chr17 (24077199-24077093)
	1-107, gnl\|mm7\|chr11 (78260588-78260440)
	1-107, gnl\|monDom2\|scaffold_44 (14668171-14668316)
	1-107, gnl\|oryCun1\|scaffold_76397 (355-207)
	1-107, gnl\|panTro1\|chr19 (27419277-27419425)
	1-107, gnl\|rheMac2\|chr16 (23931163-23931311)
	1-107, gnl\|rn3\|chr10 (64470152-64470300)
	1-107, gnl\|tetNig1\|chr16 (3976164-3976033)

	317-729, gnl\|bosTau2\|chr19 (13690629-13690220)
	317-729, gnl\|Hg17\|chr17 (24076039-24075634)
	317-729, gnl\|Mm7\|chr11 (78261521-78261932)