Ss1.1-Mixc-0028n09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCAATGTGGGAAAATCAAGATTCTGCACAAACAAATGGAATTGATTATGTTTTGTCAA AGGCTGAAATTGCATCTTGTAGTTATGAAGCCAGACAAGTTGGCATTAGAAATGGAATGT ACTTTGGGCAAGCAAAACAACTTTGTCCTAGTCTTCAGGCTGTACCGTATGATTTTCATG CGTATAAGGAGGTTGCACGAACGATGTATGAAACTCTGGCAAGCTACACACATAACATCG AAGCTGTCAGCTGTGACGAAGCCCTGGTGGACATCACTGAAATCCTCGCGGAGACCAGAC TCACTCCTGACGAGTTTGCAAATGCTGTCCGCATGGAAATCAAAGACCAGACTAAATGTG CTGCCTCTGTGGGAATTGGTTCTAATATCCTCCTGGCCAGAATGGCAACTAGAAAAGCAA AACCAGATGGCCAGTACCACTTAAAACCAGAAGAAGTAGATGATTTTATCAGAGGTCAGC TGGTTACGAATCTACCAGGCGTTGGACGTTCGATGGAATCCAAGTTGATGTCTTTGGGAA TTAGAACTTGTGGAGACTTGCAGTATATGACCATGGCAAAGCTCCAGAAAGAATTTGGAC CCAAAACAGGACAGATGCTTTATCGGTTCTGCCGTGGTTTGGATGATAGACCAGTTCGAA CTGAAAAGGAAAGAAAATCTGTTTCAGCTGAGATCAACTATGGAATAAGGTGTACACAGC CTAAAGAAGCAGAAGCTTTTCTTCTGAGCCTTTCGGAAGAAATTCAGCGACGACTGGAAA CTGCTGGTGTGAAGGGTAAACGCCTAACTCTCAAAATCATGGTACGAAAGCCAGGGGCCC CTGTAGAAACTGCAAAATTTGGAGGCCATGGAATCTGTGATACCATTTGCAGGACCGTAA CTCTTGACCAGGCAACAGATAGTGCAAAAGTAATTGGAAAGGCTACGCTAAACATGTTTC ATGCAATGAAACTCAACATATCGGATATGAGAGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCAATGTGGGAAAATCAAGATTCTGCACAAACAAATGGAATTGATTATGTTTTGTCAA AGGCTGAAATTGCATCTTGTAGTTATGAAGCCAGACAAGTTGGCATTAGAAATGGAATGT ACTTTGGGCAAGCAAAACAACTTTGTCCTAGTCTTCAGGCTGTACCGTATGATTTTCATG CGTATAAGGAGGTTGCACGAACGATGTATGAAACTCTGGCAAGCTACACACATAACATCG AAGCTGTCAGCTGTGACGAAGCCCTGGTGGACATCACTGAAATCCTCGCGGAGACCAGAC TCACTCCTGACGAGTTTGCAAATGCTGTCCGCATGGAAATCAAAGACCAGACTAAATGTG CTGCCTCTGTGGGAATTGGTTCTAATATCCTCCTGGCCAGAATGGCAACTAGAAAAGCAA AACCAGATGGCCAGTACCACTTAAAACCAGAAGAAGTAGATGATTTTATCAGAGGTCAGC TGGTTACGAATCTACCAGGCGTTGGACGTTCGATGGAATCCAAGTTGATGTCTTTGGGAA TTAGAACTTGTGGAGACTTGCAGTATATGACCATGGCAAAGCTCCAGAAAGAATTTGGAC CCAAAACAGGACAGATGCTTTATCGGTTCTGCCGTGGTTTGGATGATAGACCAGTTCGAA CTGAAAAGGAAAGAAAATCTGTTTCAGCTGAGATCAACTATGGAATAAGGTGTACACAGC CTAAAGAAGCAGAAGCTTTTCTTCTGAGCCTTTCGGAAGAAATTCAGCGACGACTGGAAA CTGCTGGTGTGAAGGGTAAACGCCTAACTCTCAAAATCATGGTACGAAAGCCAGGGGCCC CTGTAGAAACTGCAAAATTTGGAGGCCATGGAATCTGTGATACCATTTGCAGGACCGTAA CTCTTGACCAGGCAACAGATAGTGCAAAAGTAATTGGAAAGGCTACGCTAAACATGTTTC ATGCAATGAAACTCAACATATCGGATATGAGAGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 497-656, + strand, RNAz p=0.835201 | |
| 537-655, - strand, RNAz p=0.601951 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 497-656, + strand, RNAz p=0.835201 | |
| 537-655, - strand, RNAz p=0.601951 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-114, gnl|bosTau2|chr11 (1453477-1453364) | |
| 1-114, gnl|Hg17|chr2 (99504913-99504802) | |
| 1-114, gnl|Mm7|chr1 (38320764-38320651) | |
| 217-380, gnl|bosTau2|chr11 (1445479-1445317) | |
| 217-380, gnl|canFam2|chr10 (46350466-46350263) | |
| 217-380, gnl|danRer3|chr15 (41654636-41654840) | |
| 217-380, gnl|dasNov1|scaffold_1401 (21597-21395) | |
| 217-380, gnl|fr1|chrUn (92436916-92437091) | |
| 217-380, gnl|galGal2|chr1 (125639756-125639938) | |
| 217-380, gnl|hg17|chr2 (99496454-99496657) | |
| 217-380, gnl|Hg17|chr2 (99496639-99496477) | |
| 217-380, gnl|loxAfr1|scaffold_90562 (9027-8824) | |
| 217-380, gnl|mm7|chr1 (38312699-38312902) | |
| 217-380, gnl|Mm7|chr1 (38312884-38312722) | |
| 217-380, gnl|monDom2|scaffold_11 (15456989-15457198) | |
| 217-380, gnl|oryCun1|scaffold_111133 (2735-2532) | |
| 217-380, gnl|panTro1|chr12 (102342269-102342472) | |
| 217-380, gnl|rheMac2|chr13 (99365290-99365493) | |
| 217-380, gnl|rn3|chr9 (37009105-37009306) | |
| 217-380, gnl|tetNig1|chr2 (8877903-8877741) | |
| 217-380, gnl|xenTro1|scaffold_798 (31986-31800) | |
| 497-719, gnl|bosTau2|chr11 (1436111-1435889) | |
| 497-719, gnl|canFam2|chr10 (46358363-46358190) | |
| 497-719, gnl|danRer3|chr15 (41651992-41652165) | |
| 497-719, gnl|dasNov1|scaffold_1401 (28435-28262) | |
| 497-719, gnl|echTel1|scaffold_264854 (4961-4788) | |
| 497-719, gnl|fr1|chrUn (92436400-92436573) | |
| 497-719, gnl|galGal2|chr1 (125634893-125635066) | |
| 497-719, gnl|hg17|chr2 (99487710-99487883) | |
| 497-719, gnl|Hg17|chr2 (99487933-99487711) | |
| 497-719, gnl|mm7|chr1 (38304495-38304668) | |
| 497-719, gnl|Mm7|chr1 (38304718-38304496) | |
| 497-719, gnl|monDom2|scaffold_11 (15454051-15454224) | |
| 497-719, gnl|oryCun1|scaffold_178363 (2485-2335) | |
| 497-719, gnl|panTro1|chr12 (102333481-102333654) | |
| 497-719, gnl|rn3|chr9 (37002454-37002627) | |
| 497-719, gnl|tetNig1|chr2 (8878402-8878235) | |
| 497-719, gnl|xenTro1|scaffold_798 (43013-42840) | |
| 881-996, gnl|bosTau2|chr11 (1430708-1430593) | |
| 881-996, gnl|canFam2|chr10 (46364356-46364190) | |
| 881-996, gnl|danRer3|chr15 (41651254-41651393) | |
| 881-996, gnl|dasNov1|scaffold_1401 (35388-35221) | |
| 881-996, gnl|echTel1|scaffold_264854 (12706-12547) | |
| 881-996, gnl|fr1|chrUn (92435875-92436041) | |
| 881-996, gnl|galGal2|chr1 (125632200-125632384) | |
| 881-996, gnl|hg17|chr2 (99482998-99483156) | |
| 881-996, gnl|Hg17|chr2 (99483123-99483008) | |
| 881-996, gnl|loxAfr1|scaffold_94594 (9441-9607) | |
| 881-996, gnl|mm7|chr1 (38299047-38299210) | |
| 881-996, gnl|Mm7|chr1 (38299169-38299054) | |
| 881-996, gnl|monDom2|scaffold_11 (15431435-15431603) | |
| 881-996, gnl|oryCun1|scaffold_178363 (7579-7418) | |
| 881-996, gnl|panTro1|chr12 (102328506-102328664) | |
| 881-996, gnl|rheMac2|chr13 (99352248-99352406) | |
| 881-996, gnl|rn3|chr9 (37000076-37000237) | |
| 881-996, gnl|xenTro1|scaffold_798 (44916-44749) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-114, gnl|bosTau2|chr11 (1453477-1453364) | |
| 1-114, gnl|Hg17|chr2 (99504913-99504802) | |
| 1-114, gnl|Mm7|chr1 (38320764-38320651) | |
| 217-380, gnl|bosTau2|chr11 (1445479-1445317) | |
| 217-380, gnl|canFam2|chr10 (46350466-46350263) | |
| 217-380, gnl|danRer3|chr15 (41654636-41654840) | |
| 217-380, gnl|dasNov1|scaffold_1401 (21597-21395) | |
| 217-380, gnl|fr1|chrUn (92436916-92437091) | |
| 217-380, gnl|galGal2|chr1 (125639756-125639938) | |
| 217-380, gnl|hg17|chr2 (99496454-99496657) | |
| 217-380, gnl|Hg17|chr2 (99496639-99496477) | |
| 217-380, gnl|loxAfr1|scaffold_90562 (9027-8824) | |
| 217-380, gnl|mm7|chr1 (38312699-38312902) | |
| 217-380, gnl|Mm7|chr1 (38312884-38312722) | |
| 217-380, gnl|monDom2|scaffold_11 (15456989-15457198) | |
| 217-380, gnl|oryCun1|scaffold_111133 (2735-2532) | |
| 217-380, gnl|panTro1|chr12 (102342269-102342472) | |
| 217-380, gnl|rheMac2|chr13 (99365290-99365493) | |
| 217-380, gnl|rn3|chr9 (37009105-37009306) | |
| 217-380, gnl|tetNig1|chr2 (8877903-8877741) | |
| 217-380, gnl|xenTro1|scaffold_798 (31986-31800) | |
| 497-719, gnl|bosTau2|chr11 (1436111-1435889) | |
| 497-719, gnl|canFam2|chr10 (46358363-46358190) | |
| 497-719, gnl|danRer3|chr15 (41651992-41652165) | |
| 497-719, gnl|dasNov1|scaffold_1401 (28435-28262) | |
| 497-719, gnl|echTel1|scaffold_264854 (4961-4788) | |
| 497-719, gnl|fr1|chrUn (92436400-92436573) | |
| 497-719, gnl|galGal2|chr1 (125634893-125635066) | |
| 497-719, gnl|hg17|chr2 (99487710-99487883) | |
| 497-719, gnl|Hg17|chr2 (99487933-99487711) | |
| 497-719, gnl|mm7|chr1 (38304495-38304668) | |
| 497-719, gnl|Mm7|chr1 (38304718-38304496) | |
| 497-719, gnl|monDom2|scaffold_11 (15454051-15454224) | |
| 497-719, gnl|oryCun1|scaffold_178363 (2485-2335) | |
| 497-719, gnl|panTro1|chr12 (102333481-102333654) | |
| 497-719, gnl|rn3|chr9 (37002454-37002627) | |
| 497-719, gnl|tetNig1|chr2 (8878402-8878235) | |
| 497-719, gnl|xenTro1|scaffold_798 (43013-42840) | |
| 881-996, gnl|bosTau2|chr11 (1430708-1430593) | |
| 881-996, gnl|canFam2|chr10 (46364356-46364190) | |
| 881-996, gnl|danRer3|chr15 (41651254-41651393) | |
| 881-996, gnl|dasNov1|scaffold_1401 (35388-35221) | |
| 881-996, gnl|echTel1|scaffold_264854 (12706-12547) | |
| 881-996, gnl|fr1|chrUn (92435875-92436041) | |
| 881-996, gnl|galGal2|chr1 (125632200-125632384) | |
| 881-996, gnl|hg17|chr2 (99482998-99483156) | |
| 881-996, gnl|Hg17|chr2 (99483123-99483008) | |
| 881-996, gnl|loxAfr1|scaffold_94594 (9441-9607) | |
| 881-996, gnl|mm7|chr1 (38299047-38299210) | |
| 881-996, gnl|Mm7|chr1 (38299169-38299054) | |
| 881-996, gnl|monDom2|scaffold_11 (15431435-15431603) | |
| 881-996, gnl|oryCun1|scaffold_178363 (7579-7418) | |
| 881-996, gnl|panTro1|chr12 (102328506-102328664) | |
| 881-996, gnl|rheMac2|chr13 (99352248-99352406) | |
| 881-996, gnl|rn3|chr9 (37000076-37000237) | |
| 881-996, gnl|xenTro1|scaffold_798 (44916-44749) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) |