Non-Coding RNA Search

Ss1.1-Mixc-0029,b07.3

Sequence:


               
               ATGGAGTTGGAGAAGCAGCAGTGTGTGACCAGTGAACTCGAACTCTCCATCCAGGAGGCG
AAGCAGGATAAGTGCAAGGCGGAGTATGGGCACCTGCGAGCCGAGATCAAGAAGCTGAAG
GACTGCCTGGAGGATGCCGAGCAGCGGGTTGGAAATTAAGCTCAGCAAGCAGTCCAGTAT
AAAGAAGAGGCCACACAGGCAAAGGATAACCTGGAGGAGTCCCAGAGGAAACTGCAAAGC
TCCATCTTCCTGGAGAAGCAGAGGACAGAGACGATCCAGGAGCTCCAGAGAGAAATTCAG
AAGCTGCAGAAGGATTCCTTGATGGTTGAGGAGGAACTCACACCCAGCAGGAAACGGATA
GAGGAGCTGACATTCGAACTCTCTGAGGCCTCGAGGAAGCTGGAATGTTCAGAGAAGGAA
AAGAGGCAGTTTCAGAAGACAGTGACTGACCAGGATACAAAACTGAGTGAACTGCTAGAT
CGTATAAATATCGTTCAGCACCAGAACAGGGAGCAAGCCTCCTCCAGATGCAGCCTCGAA
GAACAGCTTCAGGAAGTAACCAGGTTGCTGGAGGAGAAACGGGAACACTTGAAAAAGAGC
AAAGAGCAAGAGACAATATTGGAAAAAGAGCTCGAGACATTCCGACAGGAAGAAAAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAGTTGGAGAAGCAGCAGTGTGTGACCAGTGAACTCGAACTCTCCATCCAGGAGGCG
AAGCAGGATAAGTGCAAGGCGGAGTATGGGCACCTGCGAGCCGAGATCAAGAAGCTGAAG
GACTGCCTGGAGGATGCCGAGCAGCGGGTTGGAAATTAAGCTCAGCAAGCAGTCCAGTAT
AAAGAAGAGGCCACACAGGCAAAGGATAACCTGGAGGAGTCCCAGAGGAAACTGCAAAGC
TCCATCTTCCTGGAGAAGCAGAGGACAGAGACGATCCAGGAGCTCCAGAGAGAAATTCAG
AAGCTGCAGAAGGATTCCTTGATGGTTGAGGAGGAACTCACACCCAGCAGGAAACGGATA
GAGGAGCTGACATTCGAACTCTCTGAGGCCTCGAGGAAGCTGGAATGTTCAGAGAAGGAA
AAGAGGCAGTTTCAGAAGACAGTGACTGACCAGGATACAAAACTGAGTGAACTGCTAGAT
CGTATAAATATCGTTCAGCACCAGAACAGGGAGCAAGCCTCCTCCAGATGCAGCCTCGAA
GAACAGCTTCAGGAAGTAACCAGGTTGCTGGAGGAGAAACGGGAACACTTGAAAAAGAGC
AAAGAGCAAGAGACAATATTGGAAAAAGAGCTCGAGACATTCCGACAGGAAGAAAAATAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               214-356, + strand, RNAz p=0.994761

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               214-356, + strand, RNAz p=0.994761

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               207-328, + strand, RNAmicro p=0.954134

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               207-328, + strand, RNAmicro p=0.954134

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               159-356, gnl|bosTau2|chr18 (32069888-32070085)
               

               
               159-356, gnl|canFam2|chr5 (80853049-80853528)
               

               
               159-356, gnl|dasNov1|scaffold_6127 (55002-55498)
               

               
               159-356, gnl|hg17|chr16 (70721636-70722132)
               

               
               159-356, gnl|Hg17|chr16 (70722124-70721922)
               

               
               159-356, gnl|loxAfr1|scaffold_699 (129482-129979)
               

               
               159-356, gnl|mm7|chr8 (108130740-108130276)
               

               
               159-356, gnl|Mm7|chr8 (108130282-108130479)
               

               
               159-356, gnl|oryCun1|scaffold_177992 (8363-7880)
               

               
               159-356, gnl|panTro1|chr18 (65090732-65091228)
               

               
               159-356, gnl|rheMac2|chr20 (70506190-70505700)
               

               
               159-356, gnl|rn3|chr19 (39404190-39403711)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-356, gnl|bosTau2|chr18 (32069888-32070085)
               

               
               159-356, gnl|canFam2|chr5 (80853049-80853528)
               

               
               159-356, gnl|dasNov1|scaffold_6127 (55002-55498)
               

               
               159-356, gnl|hg17|chr16 (70721636-70722132)
               

               
               159-356, gnl|Hg17|chr16 (70722124-70721922)
               

               
               159-356, gnl|loxAfr1|scaffold_699 (129482-129979)
               

               
               159-356, gnl|mm7|chr8 (108130740-108130276)
               

               
               159-356, gnl|Mm7|chr8 (108130282-108130479)
               

               
               159-356, gnl|oryCun1|scaffold_177992 (8363-7880)
               

               
               159-356, gnl|panTro1|chr18 (65090732-65091228)
               

               
               159-356, gnl|rheMac2|chr20 (70506190-70505700)
               

               
               159-356, gnl|rn3|chr19 (39404190-39403711)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	159-356, gnl\|bosTau2\|chr18 (32069888-32070085)
	159-356, gnl\|canFam2\|chr5 (80853049-80853528)
	159-356, gnl\|dasNov1\|scaffold_6127 (55002-55498)
	159-356, gnl\|hg17\|chr16 (70721636-70722132)
	159-356, gnl\|Hg17\|chr16 (70722124-70721922)
	159-356, gnl\|loxAfr1\|scaffold_699 (129482-129979)
	159-356, gnl\|mm7\|chr8 (108130740-108130276)
	159-356, gnl\|Mm7\|chr8 (108130282-108130479)
	159-356, gnl\|oryCun1\|scaffold_177992 (8363-7880)
	159-356, gnl\|panTro1\|chr18 (65090732-65091228)
	159-356, gnl\|rheMac2\|chr20 (70506190-70505700)
	159-356, gnl\|rn3\|chr19 (39404190-39403711)