Ss1.1-Mixc-0029,d04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCTGAGGATACCCGCGGACAAGGGCAACGGTTTGGCTCGATTCTTCAGCTTGAGTAC CTGCCGCCGCCGCCGCCGCCGCCTACTCCTCCACAGAGTACCCCGCAGGATCAGTGCATA TCCTCTCGGACATGGAGACTGTGGTTCGCCGCTGCCCATTCTTATCCCGAGTGCCTCAGG CCTTTCTGCAGAAGGCAGGCAAATCCCTGTTGTTCTATGCCCAAAACTGCCCTAAGATGA TGGAAGTTGGGGTCAAGCCAGCCCCTCGGGCCCTGTCCACTTCATCAGTACTCTGCCACC AGGTCAAGGAAACCCCTCCAGCCAATGAGAAGGACAAAACTGCCAAAGCCGAGGTTCAGC AGGCTCCTGATGGCTCCCAGCGGACCCCAGATGGCACGCAGCTTCCAACTGGTCACCCCT CCCCTGCCTCGAGCCAGAGCACTGCAAGCAAATGTCCTTTCCTGGCGGCCCAGATGAGCC AGGGTGGCAGCAGCGTCTTCCGCAAAGCCAGCCTGGAACTTCAGGAGGACGTGCAGGAAA TGCATGCTGTGAGGGAAGAGGTTGCTCAAACCTCAGTGAATCCCAGTGTGATTAACGTGA AGACTGATGGAGGGGAGCCGAGTGGACTGCTCAAGAACTTTCAGGATATCATGCGAAAGC AGAGACCAGAAGGGGTCTCCCATCTTCTTCAAGATAACTTGCCAAAATCTGTTTCCACTT TTCAGTATGATCGTTTCTTTGAGAAGAAAATTGATGAGAAAAAAAATGACCATACATATC GGGTTTTCAAAACTGTGAACCGGAAGGCGCAGTGCTTCCCCATGGCGGATGACTATTCAG ACTCTCTCGTCAGCAAAAGGCAGGTGTCCGTCTGGTGTAGCAACGACTACCTCGGGATGA GTCGCCACCCACGGGTGTGTGGGGCCGTCATAGATACTTTGAAACAATATGGTACTGGAG CTGGGGGTACTAGAAACATTTCTGGAACTAGTAAATTCCACGTGGACCTGGAGCAGGAGC TGGCTGACCTCCACGGGAAAGATGCAGCACTCTTATTTTCCTCGTGCTTTGTGGCCAATG ACTCAACCCTCTTCACTCTGGCTAAAATGATGCCAGGCTGTGAGATTTACTCTGATTCTG GGAACCATGCCTCCATGATCCAAGGGATCCGGAACAGCGGAGTGCCCAAGTACATCTTCC GCCACAATGACGTCCACCACCTCCGAGAACTGCTGCAGAGGTCGGACCCCGCAGTCCCCA AGATTGTCGCTTTTGAAACTGTGCATTCCATGGACGGGGCTGTGTGCCCACTGGAAGAGC TGTGTGATGTGGCTCACGAGTTTGGAGCCATCACCTTCGTGGATGAGGTCCATGCAGTGG GGCTGTATGGGGCTCAAGGCGGAGGGATTGGCGATCGGGATGGAGTTATGCCAAAAATGG ACATCATTTCTGGAACTCTTGGCAAAGCCTTTGGCTGTGTTGGAGGGTACATCGCCAGCA CGAATTCCCTGGTTGACACCATCCGGTCCTACGCGGCTGGCTTCATCTTCACCACCTCCC TGCCACCCATGGTGCTGGCTGGAGCCCTGGAATCTGTGCGGATCCTCAAGAGTGCCGAGG GCCGGGCCCTCCGCCGCCAGCACCAGCGCAACGTCAAGCTCATGAGGCAGATGCTGATGG ACGCCGGCCTCCCAGTCATCCACTGCCCCAGTCACATCATCCCTGTCCGGGTTTCAGATG CTGCTAAAAACACAGAGATCTGTGATGAACTAATGAGTAGATACAACATCTACGTCCAAG CGATCAATTACCCCACGGTGCCCCGGGGGGAAGAGCTGCTGCGGATCGCCCCCACGCCCC TCCACACCCCGCAGATGATGACCAACTTCGTTGACAATCTGCTGGCTGCATGGAAGCAAG TTGGGCTGGAACTCAAGCCACATTCCTCAGCTGAGTGCAACTTCTGCAGGAGGCCACTGC ATTTTGAAGTGATGAGCGAAAGAGAGAAATCCTACTTCTCGGGTATGAGCAAGTTGGTGT CTGCTCAGGCCTGAGTGTGCCACAACCTCAGTTACTCCTCCTGAGCCCAGTCCAGGCCAT GTTGCATCCACATAGTCTCTCCAGAGTTGTCTTTGTATGTGAATTAAATTATATTAAATT TTAATCTATGGTAATCACATAGTCCTGAAAATAAATTCTTGTCTAAGTCAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCTGAGGATACCCGCGGACAAGGGCAACGGTTTGGCTCGATTCTTCAGCTTGAGTAC CTGCCGCCGCCGCCGCCGCCGCCTACTCCTCCACAGAGTACCCCGCAGGATCAGTGCATA TCCTCTCGGACATGGAGACTGTGGTTCGCCGCTGCCCATTCTTATCCCGAGTGCCTCAGG CCTTTCTGCAGAAGGCAGGCAAATCCCTGTTGTTCTATGCCCAAAACTGCCCTAAGATGA TGGAAGTTGGGGTCAAGCCAGCCCCTCGGGCCCTGTCCACTTCATCAGTACTCTGCCACC AGGTCAAGGAAACCCCTCCAGCCAATGAGAAGGACAAAACTGCCAAAGCCGAGGTTCAGC AGGCTCCTGATGGCTCCCAGCGGACCCCAGATGGCACGCAGCTTCCAACTGGTCACCCCT CCCCTGCCTCGAGCCAGAGCACTGCAAGCAAATGTCCTTTCCTGGCGGCCCAGATGAGCC AGGGTGGCAGCAGCGTCTTCCGCAAAGCCAGCCTGGAACTTCAGGAGGACGTGCAGGAAA TGCATGCTGTGAGGGAAGAGGTTGCTCAAACCTCAGTGAATCCCAGTGTGATTAACGTGA AGACTGATGGAGGGGAGCCGAGTGGACTGCTCAAGAACTTTCAGGATATCATGCGAAAGC AGAGACCAGAAGGGGTCTCCCATCTTCTTCAAGATAACTTGCCAAAATCTGTTTCCACTT TTCAGTATGATCGTTTCTTTGAGAAGAAAATTGATGAGAAAAAAAATGACCATACATATC GGGTTTTCAAAACTGTGAACCGGAAGGCGCAGTGCTTCCCCATGGCGGATGACTATTCAG ACTCTCTCGTCAGCAAAAGGCAGGTGTCCGTCTGGTGTAGCAACGACTACCTCGGGATGA GTCGCCACCCACGGGTGTGTGGGGCCGTCATAGATACTTTGAAACAATATGGTACTGGAG CTGGGGGTACTAGAAACATTTCTGGAACTAGTAAATTCCACGTGGACCTGGAGCAGGAGC TGGCTGACCTCCACGGGAAAGATGCAGCACTCTTATTTTCCTCGTGCTTTGTGGCCAATG ACTCAACCCTCTTCACTCTGGCTAAAATGATGCCAGGCTGTGAGATTTACTCTGATTCTG GGAACCATGCCTCCATGATCCAAGGGATCCGGAACAGCGGAGTGCCCAAGTACATCTTCC GCCACAATGACGTCCACCACCTCCGAGAACTGCTGCAGAGGTCGGACCCCGCAGTCCCCA AGATTGTCGCTTTTGAAACTGTGCATTCCATGGACGGGGCTGTGTGCCCACTGGAAGAGC TGTGTGATGTGGCTCACGAGTTTGGAGCCATCACCTTCGTGGATGAGGTCCATGCAGTGG GGCTGTATGGGGCTCAAGGCGGAGGGATTGGCGATCGGGATGGAGTTATGCCAAAAATGG ACATCATTTCTGGAACTCTTGGCAAAGCCTTTGGCTGTGTTGGAGGGTACATCGCCAGCA CGAATTCCCTGGTTGACACCATCCGGTCCTACGCGGCTGGCTTCATCTTCACCACCTCCC TGCCACCCATGGTGCTGGCTGGAGCCCTGGAATCTGTGCGGATCCTCAAGAGTGCCGAGG GCCGGGCCCTCCGCCGCCAGCACCAGCGCAACGTCAAGCTCATGAGGCAGATGCTGATGG ACGCCGGCCTCCCAGTCATCCACTGCCCCAGTCACATCATCCCTGTCCGGGTTTCAGATG CTGCTAAAAACACAGAGATCTGTGATGAACTAATGAGTAGATACAACATCTACGTCCAAG CGATCAATTACCCCACGGTGCCCCGGGGGGAAGAGCTGCTGCGGATCGCCCCCACGCCCC TCCACACCCCGCAGATGATGACCAACTTCGTTGACAATCTGCTGGCTGCATGGAAGCAAG TTGGGCTGGAACTCAAGCCACATTCCTCAGCTGAGTGCAACTTCTGCAGGAGGCCACTGC ATTTTGAAGTGATGAGCGAAAGAGAGAAATCCTACTTCTCGGGTATGAGCAAGTTGGTGT CTGCTCAGGCCTGAGTGTGCCACAACCTCAGTTACTCCTCCTGAGCCCAGTCCAGGCCAT GTTGCATCCACATAGTCTCTCCAGAGTTGTCTTTGTATGTGAATTAAATTATATTAAATT TTAATCTATGGTAATCACATAGTCCTGAAAATAAATTCTTGTCTAAGTCAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 357-558, - strand, RNAz p=0.90951 | |
| 436-2091, - strand, RNAz p=0.895665 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 357-558, - strand, RNAz p=0.90951 | |
| 436-2091, - strand, RNAz p=0.895665 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 105-330, gnl|bosTau2|chr22 (36770854-36771076) | |
| 105-330, gnl|Hg17|chr3 (52208273-52208496) | |
| 105-330, gnl|Mm7|chr9 (105976430-105976207) | |
| 357-558, gnl|bosTau2|chr22 (36774884-36775085) | |
| 357-558, gnl|canFam2|chr20 (40557918-40557732) | |
| 357-558, gnl|danRer3|chr11 (1263398-1263584) | |
| 357-558, gnl|dasNov1|scaffold_65004 (6818-7007) | |
| 357-558, gnl|fr1|chrUn (153847420-153847244) | |
| 357-558, gnl|galGal2|chr12 (2604893-2605079) | |
| 357-558, gnl|hg17|chr3 (52211611-52211798) | |
| 357-558, gnl|Hg17|chr3 (52211610-52211790) | |
| 357-558, gnl|loxAfr1|scaffold_36367 (24646-24478) | |
| 357-558, gnl|mm7|chr9 (105972797-105972604) | |
| 357-558, gnl|Mm7|chr9 (105972796-105972610) | |
| 357-558, gnl|monDom2|scaffold_5 (71123751-71123565) | |
| 357-558, gnl|oryCun1|scaffold_196786 (58112-57930) | |
| 357-558, gnl|panTro1|chr2 (53825485-53825672) | |
| 357-558, gnl|rheMac2|chr2 (84193757-84193570) | |
| 357-558, gnl|tetNig1|chr11 (3528388-3528561) | |
| 357-558, gnl|xenTro1|scaffold_1092 (217307-217493) | |
| 709-931, gnl|bosTau2|chr22 (36776792-36777014) | |
| 709-931, gnl|canFam2|chrX (46741906-46742066) | |
| 709-931, gnl|danRer3|chrUn (140837682-140837842) | |
| 709-931, gnl|dasNov1|scaffold_129927 (6324-6165) | |
| 709-931, gnl|echTel1|scaffold_293589 (48944-49104) | |
| 709-931, gnl|fr1|chrUn (29381727-29381884) | |
| 709-931, gnl|galGal2|chr12 (2606496-2606336) | |
| 709-931, gnl|Hg17|chr3 (52213749-52213971) | |
| 709-931, gnl|hg17|chrX (54930500-54930660) | |
| 709-931, gnl|loxAfr1|scaffold_14581 (19905-19742) | |
| 709-931, gnl|Mm7|chr9 (105970786-105970564) | |
| 709-931, gnl|mm7|chrX (145316091-145315931) | |
| 709-931, gnl|monDom2|scaffold_117 (3298304-3298141) | |
| 709-931, gnl|oryCun1|scaffold_177012 (61188-61028) | |
| 709-931, gnl|panTro1|chrX (56200380-56200540) | |
| 709-931, gnl|rheMac2|chrX (53336153-53336313) | |
| 709-931, gnl|tetNig1|chr9 (1832430-1832587) | |
| 709-931, gnl|xenTro1|scaffold_82 (2215699-2215539) | |
| 932-1117, gnl|bosTau2|chr22 (36777867-36778052) | |
| 932-1117, gnl|Hg17|chr3 (52214895-52215080) | |
| 932-1117, gnl|Mm7|chr9 (105969164-105968979) | |
| 1458-1732, gnl|bosTau2|chr22 (36781174-36781448) | |
| 1458-1732, gnl|canFam2|chr20 (40551032-40551229) | |
| 1458-1732, gnl|dasNov1|scaffold_33745 (7661-7494) | |
| 1458-1732, gnl|echTel1|scaffold_310686 (36020-36210) | |
| 1458-1732, gnl|hg17|chr12 (41610247-41610426) | |
| 1458-1732, gnl|Hg17|chr3 (52220332-52220609) | |
| 1458-1732, gnl|loxAfr1|scaffold_1567 (123936-123769) | |
| 1458-1732, gnl|mm7|chr9 (105965924-105966133) | |
| 1458-1732, gnl|Mm7|chr9 (105966160-105965886) | |
| 1458-1732, gnl|monDom2|scaffold_56 (3728867-3728579) | |
| 1458-1732, gnl|oryCun1|scaffold_84437 (4047-4220) | |
| 1458-1732, gnl|panTro1|chr10 (42205968-42206147) | |
| 1458-1732, gnl|rheMac2|chr11 (39844879-39845058) | |
| 1893-2210, gnl|bosTau2|chr22 (36783461-36783771) | |
| 1893-2210, gnl|Hg17|chr3 (52223075-52223381) | |
| 1893-2210, gnl|Mm7|chr9 (105963646-105963352) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 105-330, gnl|bosTau2|chr22 (36770854-36771076) | |
| 105-330, gnl|Hg17|chr3 (52208273-52208496) | |
| 105-330, gnl|Mm7|chr9 (105976430-105976207) | |
| 357-558, gnl|bosTau2|chr22 (36774884-36775085) | |
| 357-558, gnl|canFam2|chr20 (40557918-40557732) | |
| 357-558, gnl|danRer3|chr11 (1263398-1263584) | |
| 357-558, gnl|dasNov1|scaffold_65004 (6818-7007) | |
| 357-558, gnl|fr1|chrUn (153847420-153847244) | |
| 357-558, gnl|galGal2|chr12 (2604893-2605079) | |
| 357-558, gnl|hg17|chr3 (52211611-52211798) | |
| 357-558, gnl|Hg17|chr3 (52211610-52211790) | |
| 357-558, gnl|loxAfr1|scaffold_36367 (24646-24478) | |
| 357-558, gnl|mm7|chr9 (105972797-105972604) | |
| 357-558, gnl|Mm7|chr9 (105972796-105972610) | |
| 357-558, gnl|monDom2|scaffold_5 (71123751-71123565) | |
| 357-558, gnl|oryCun1|scaffold_196786 (58112-57930) | |
| 357-558, gnl|panTro1|chr2 (53825485-53825672) | |
| 357-558, gnl|rheMac2|chr2 (84193757-84193570) | |
| 357-558, gnl|tetNig1|chr11 (3528388-3528561) | |
| 357-558, gnl|xenTro1|scaffold_1092 (217307-217493) | |
| 709-931, gnl|bosTau2|chr22 (36776792-36777014) | |
| 709-931, gnl|canFam2|chrX (46741906-46742066) | |
| 709-931, gnl|danRer3|chrUn (140837682-140837842) | |
| 709-931, gnl|dasNov1|scaffold_129927 (6324-6165) | |
| 709-931, gnl|echTel1|scaffold_293589 (48944-49104) | |
| 709-931, gnl|fr1|chrUn (29381727-29381884) | |
| 709-931, gnl|galGal2|chr12 (2606496-2606336) | |
| 709-931, gnl|Hg17|chr3 (52213749-52213971) | |
| 709-931, gnl|hg17|chrX (54930500-54930660) | |
| 709-931, gnl|loxAfr1|scaffold_14581 (19905-19742) | |
| 709-931, gnl|Mm7|chr9 (105970786-105970564) | |
| 709-931, gnl|mm7|chrX (145316091-145315931) | |
| 709-931, gnl|monDom2|scaffold_117 (3298304-3298141) | |
| 709-931, gnl|oryCun1|scaffold_177012 (61188-61028) | |
| 709-931, gnl|panTro1|chrX (56200380-56200540) | |
| 709-931, gnl|rheMac2|chrX (53336153-53336313) | |
| 709-931, gnl|tetNig1|chr9 (1832430-1832587) | |
| 709-931, gnl|xenTro1|scaffold_82 (2215699-2215539) | |
| 932-1117, gnl|bosTau2|chr22 (36777867-36778052) | |
| 932-1117, gnl|Hg17|chr3 (52214895-52215080) | |
| 932-1117, gnl|Mm7|chr9 (105969164-105968979) | |
| 1458-1732, gnl|bosTau2|chr22 (36781174-36781448) | |
| 1458-1732, gnl|canFam2|chr20 (40551032-40551229) | |
| 1458-1732, gnl|dasNov1|scaffold_33745 (7661-7494) | |
| 1458-1732, gnl|echTel1|scaffold_310686 (36020-36210) | |
| 1458-1732, gnl|hg17|chr12 (41610247-41610426) | |
| 1458-1732, gnl|Hg17|chr3 (52220332-52220609) | |
| 1458-1732, gnl|loxAfr1|scaffold_1567 (123936-123769) | |
| 1458-1732, gnl|mm7|chr9 (105965924-105966133) | |
| 1458-1732, gnl|Mm7|chr9 (105966160-105965886) | |
| 1458-1732, gnl|monDom2|scaffold_56 (3728867-3728579) | |
| 1458-1732, gnl|oryCun1|scaffold_84437 (4047-4220) | |
| 1458-1732, gnl|panTro1|chr10 (42205968-42206147) | |
| 1458-1732, gnl|rheMac2|chr11 (39844879-39845058) | |
| 1893-2210, gnl|bosTau2|chr22 (36783461-36783771) | |
| 1893-2210, gnl|Hg17|chr3 (52223075-52223381) | |
| 1893-2210, gnl|Mm7|chr9 (105963646-105963352) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cmu (1.11836) | |
| cte (0.87822) | |
| sto (0.719295) | |
| che (0.68157) | |
| cli (0.611247) | |
| ste (0.540833) | |
| ski (0.440205) | |
| col (0.390016) | |
| nco (0.323468) | |
| lun (0.300978) | |
| cst (0.280073) | |
| sug (0.254582) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cmu (1.11836) | |
| cte (0.87822) | |
| sto (0.719295) | |
| che (0.68157) | |
| cli (0.611247) | |
| ste (0.540833) | |
| ski (0.440205) | |
| col (0.390016) | |
| nco (0.323468) | |
| lun (0.300978) | |
| cst (0.280073) | |
| sug (0.254582) | |
| eep (0.245128) | |
| cbe (0.239234) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| jej (0.197844) | |
| ton (0.1755) | |
| nje (0.16592) | |
| cag (0.151194) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| spc (0.113366) |