Ss1.1-Mixc-0029,d12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCGCCTGCGTGATGAGCAGGCTGCTGGGGGTGACGCTGGAGCGCGTCTGCAAGGCCGTG CTCCTTCTCTGCCTGCTGCACTTCCTCGTGGCCGTCATCCTCTACTTTGACGTCTACGCC CAGCACTTGGCCTTCTTCAGCCGCTTCAGTGCGCGCGGCCCCGCCCGGGCGCTCCACCCG ACGGCCAGCAGCAGCACCAACTATTCTCGGCCCAACGCCACTGCCCCCAGCTCCGGGCTC CCCGAGGCTCCCAGCGGCCGGCCTGGCCCCACGGCTCCTGTTCTGCCGCCCTGCCCTGAC TCACCTCCTGGTCTGGTGGGCCGACTGCTGATCGAGTTCACCTCGCCCATGCCCCTGGAG CGGGTGCAGAGGGAGAACCCAAGCGTGCTCCTGGGCGGTCGCTACACCCCGCCCGACTGC ACGCCAGCCCAGACGGTGGCCGTCATCATCCCCTTTCGACACCGGGAGCACCACCTGCGC TACTGGCTCCACTACCTGCACCCCATCCTCAGACGGCAGCGGCTCCGCTACGGCATCTAC GTCATCAACCAGCACGGGGAGGACACCTTCAACCGGGCCAAGCTGCTCAACGTGGGTTTC CTAGAGGCGCTGAAGGAGGACGCCACCTACAACTGCTTCATCTTCAGTGACGTGGACCTG GTCCCCATGGATGACCGCAACCTGTACCGCTGTGGCGACCAGCCCCGCCACTTCGCCATT GCCATGGACAAGTTCGGCTTCCGGCTGCCCTATACCGGCTACTTTGGAGGTGTGTCGGGC CTGAGTAAAGCCCAGTTCCTGAGGATTAACGGCTTCCCCAACGAATACTGGGGCTGGGGT GGCGAGGATGACGACATTTTCAACCGGATCTCCCTGACTGGGATGAAGATCTCGCGCCCA GACATCCGCATAGGCCGCTACCGCATGATCAAGCACGACCGGGACAAGCATAACGAGCCC AACCCGCAGAGTGCTCTATTCACCAGGCTGATGGAGGAGGCCAGTCTGGACGAAAGAAGT AGTTCGCGTGGGAGTCTGGAATGCGAACGTCCATTGTACATGCCGAGCGTCTGACACCCC TCGCGGTCACAGTCTGAAACCTGGGAGTGAAGGACAGGGGGGAATCTGCCGACCCCAGAT TGGAAGTTTCCCTTTTGTTCCAGAGGCGCTGGGGAGTCATGGAAGGACCAGGTCTAGGAC TTCTGGAGTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCGCCTGCGTGATGAGCAGGCTGCTGGGGGTGACGCTGGAGCGCGTCTGCAAGGCCGTG CTCCTTCTCTGCCTGCTGCACTTCCTCGTGGCCGTCATCCTCTACTTTGACGTCTACGCC CAGCACTTGGCCTTCTTCAGCCGCTTCAGTGCGCGCGGCCCCGCCCGGGCGCTCCACCCG ACGGCCAGCAGCAGCACCAACTATTCTCGGCCCAACGCCACTGCCCCCAGCTCCGGGCTC CCCGAGGCTCCCAGCGGCCGGCCTGGCCCCACGGCTCCTGTTCTGCCGCCCTGCCCTGAC TCACCTCCTGGTCTGGTGGGCCGACTGCTGATCGAGTTCACCTCGCCCATGCCCCTGGAG CGGGTGCAGAGGGAGAACCCAAGCGTGCTCCTGGGCGGTCGCTACACCCCGCCCGACTGC ACGCCAGCCCAGACGGTGGCCGTCATCATCCCCTTTCGACACCGGGAGCACCACCTGCGC TACTGGCTCCACTACCTGCACCCCATCCTCAGACGGCAGCGGCTCCGCTACGGCATCTAC GTCATCAACCAGCACGGGGAGGACACCTTCAACCGGGCCAAGCTGCTCAACGTGGGTTTC CTAGAGGCGCTGAAGGAGGACGCCACCTACAACTGCTTCATCTTCAGTGACGTGGACCTG GTCCCCATGGATGACCGCAACCTGTACCGCTGTGGCGACCAGCCCCGCCACTTCGCCATT GCCATGGACAAGTTCGGCTTCCGGCTGCCCTATACCGGCTACTTTGGAGGTGTGTCGGGC CTGAGTAAAGCCCAGTTCCTGAGGATTAACGGCTTCCCCAACGAATACTGGGGCTGGGGT GGCGAGGATGACGACATTTTCAACCGGATCTCCCTGACTGGGATGAAGATCTCGCGCCCA GACATCCGCATAGGCCGCTACCGCATGATCAAGCACGACCGGGACAAGCATAACGAGCCC AACCCGCAGAGTGCTCTATTCACCAGGCTGATGGAGGAGGCCAGTCTGGACGAAAGAAGT AGTTCGCGTGGGAGTCTGGAATGCGAACGTCCATTGTACATGCCGAGCGTCTGACACCCC TCGCGGTCACAGTCTGAAACCTGGGAGTGAAGGACAGGGGGGAATCTGCCGACCCCAGAT TGGAAGTTTCCCTTTTGTTCCAGAGGCGCTGGGGAGTCATGGAAGGACCAGGTCTAGGAC TTCTGGAGTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-190, - strand, RNAz p=0.552044 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-190, - strand, RNAz p=0.552044 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-322, gnl|bosTau2|chr3 (70976914-70976592) | |
| 1-322, gnl|Hg17|chr1 (44115914-44116245) | |
| 1-322, gnl|Mm7|chr4 (117258069-117257747) | |
| 549-744, gnl|bosTau2|chr3 (70972915-70972720) | |
| 549-744, gnl|canFam2|chr15 (19281055-19280879) | |
| 549-744, gnl|danRer3|chr2 (25275184-25275355) | |
| 549-744, gnl|dasNov1|scaffold_34627 (6590-6766) | |
| 549-744, gnl|echTel1|scaffold_311345 (97814-97989) | |
| 549-744, gnl|fr1|chrUn (154115968-154115795) | |
| 549-744, gnl|galGal2|chr8 (20668884-20669060) | |
| 549-744, gnl|hg17|chr1 (44119626-44119802) | |
| 549-744, gnl|Hg17|chr1 (44119626-44119821) | |
| 549-744, gnl|loxAfr1|scaffold_6350 (91684-91512) | |
| 549-744, gnl|mm7|chr4 (117254074-117253898) | |
| 549-744, gnl|Mm7|chr4 (117254072-117253877) | |
| 549-744, gnl|monDom2|scaffold_70 (8827590-8827414) | |
| 549-744, gnl|oryCun1|scaffold_213522 (66157-65981) | |
| 549-744, gnl|panTro1|chr1_random (64807197-64807021) | |
| 549-744, gnl|rheMac2|chr1 (46908918-46909094) | |
| 549-744, gnl|rn3|chr5 (138348299-138348123) | |
| 549-744, gnl|tetNig1|chr15_random (3092843-3093016) | |
| 549-744, gnl|xenTro1|scaffold_14 (3854317-3854490) | |
| 970-1186, gnl|bosTau2|chr3 (70971254-70971039) | |
| 970-1186, gnl|canFam2|chr15 (19279632-19279336) | |
| 970-1186, gnl|dasNov1|scaffold_34627 (8183-8462) | |
| 970-1186, gnl|hg17|chr1 (44121214-44121555) | |
| 970-1186, gnl|Hg17|chr1 (44121232-44121511) | |
| 970-1186, gnl|loxAfr1|scaffold_60308 (7784-8037) | |
| 970-1186, gnl|mm7|chr4 (117252372-117252086) | |
| 970-1186, gnl|Mm7|chr4 (117252343-117252122) | |
| 970-1186, gnl|oryCun1|scaffold_184823 (4446-4157) | |
| 970-1186, gnl|panTro1|chr1_random (64805601-64805260) | |
| 970-1186, gnl|rheMac2|chr1 (46910984-46911326) | |
| 970-1186, gnl|rn3|chr5 (138346693-138346397) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-322, gnl|bosTau2|chr3 (70976914-70976592) | |
| 1-322, gnl|Hg17|chr1 (44115914-44116245) | |
| 1-322, gnl|Mm7|chr4 (117258069-117257747) | |
| 549-744, gnl|bosTau2|chr3 (70972915-70972720) | |
| 549-744, gnl|canFam2|chr15 (19281055-19280879) | |
| 549-744, gnl|danRer3|chr2 (25275184-25275355) | |
| 549-744, gnl|dasNov1|scaffold_34627 (6590-6766) | |
| 549-744, gnl|echTel1|scaffold_311345 (97814-97989) | |
| 549-744, gnl|fr1|chrUn (154115968-154115795) | |
| 549-744, gnl|galGal2|chr8 (20668884-20669060) | |
| 549-744, gnl|hg17|chr1 (44119626-44119802) | |
| 549-744, gnl|Hg17|chr1 (44119626-44119821) | |
| 549-744, gnl|loxAfr1|scaffold_6350 (91684-91512) | |
| 549-744, gnl|mm7|chr4 (117254074-117253898) | |
| 549-744, gnl|Mm7|chr4 (117254072-117253877) | |
| 549-744, gnl|monDom2|scaffold_70 (8827590-8827414) | |
| 549-744, gnl|oryCun1|scaffold_213522 (66157-65981) | |
| 549-744, gnl|panTro1|chr1_random (64807197-64807021) | |
| 549-744, gnl|rheMac2|chr1 (46908918-46909094) | |
| 549-744, gnl|rn3|chr5 (138348299-138348123) | |
| 549-744, gnl|tetNig1|chr15_random (3092843-3093016) | |
| 549-744, gnl|xenTro1|scaffold_14 (3854317-3854490) | |
| 970-1186, gnl|bosTau2|chr3 (70971254-70971039) | |
| 970-1186, gnl|canFam2|chr15 (19279632-19279336) | |
| 970-1186, gnl|dasNov1|scaffold_34627 (8183-8462) | |
| 970-1186, gnl|hg17|chr1 (44121214-44121555) | |
| 970-1186, gnl|Hg17|chr1 (44121232-44121511) | |
| 970-1186, gnl|loxAfr1|scaffold_60308 (7784-8037) | |
| 970-1186, gnl|mm7|chr4 (117252372-117252086) | |
| 970-1186, gnl|Mm7|chr4 (117252343-117252122) | |
| 970-1186, gnl|oryCun1|scaffold_184823 (4446-4157) | |
| 970-1186, gnl|panTro1|chr1_random (64805601-64805260) | |
| 970-1186, gnl|rheMac2|chr1 (46910984-46911326) | |
| 970-1186, gnl|rn3|chr5 (138346693-138346397) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| cst (0.140036) |