Ss1.1-Mixc-0029,d19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCATTTGATCGGGATCGAGCAATGCAGAGATTACTTGATACCAACCCAGAAATCAACC AGTCTGATTCTCAAGATAGCAGAGTTGCACCTAGATTGGATAGAAAAAAACGTACTGTGA ACCGAGAGGAGCTGTTGAAACAAGCAGAGTCTGTGATGCAGGATCTTGGCAGCTCCCGGG CCATGTTGGAAATCCAGTATGAAAATGAGGTTGGCACAGGGCTTGGGCCTACACTGGAGT TTTATGCACTTGTATCTCAGGAACTACAGAGAGCTGACCTGGGTCTCTGGAGAGGTGAAG AAGTAACTCTTAGCAATCCAAAAGGAAGCCAAGAAGGGACCAAGTATATTCAAAACCTCC AAGGCCTGTTTGCACTTCCCTTTGGTAGAACAGCTAAGCCAGCTCATATCGCAAAGGTTA AGATGAAGTTTCGCTTCTTAGGAAAATTAATGGCCAAGGCTATCATGGATTTCAGATTGG TGGACCTTCCCCTGGGCTTACCTTTTTATAAGTGGATGCTCCGGCAAGAAACTTCGCTGA CGTCACACGATTTGTTTGACGTTGACCCGGTTGTAGCCAGATCCGTGTATCACCTAGAAG ACATTGTCAGACAGAAGAAAAGACTTGAACAAGATAAATCCCAGACCAAAGAGAGTCTAC AGTATGCATTGGAAACCCTGACCATGAACGGTTGCTCAGTGGAGGATCTAGGGCTGGACT TCACACTGCCAGGATTCCCCAACATCGAACTGAAGAAGGGCGGCAAGGACATACCCGTTA CCATCCACAACTTAGAGGAGTATCTCAGACTGGTTATATTCTGGGCACTGAATGAAGGCG TTTCCAGGCAGTTCGATTCATTCAGAGATGGCTTCGAGTCAGTCTTCCCGCTCAGTCACC TGCAGTACTTCTATCCCGAAGAGCTGGACCAGCTCCTGTGTGGCAGTAAAGCGGACACCT GGGATGCCAAGACTCTGATGGAGTGCTGCAGGCCGGACCACGGCTACACGCACGACAGTC GGGCTGTGAAGTTCTTGTTTGAGATTCTCAGTAGTTTTGATAATGAGCAGCAGAGGTTAT TTCTCCAGTTTGTGACAGGTAGCCCGAGATTGCCTGTTGGAGGCTTCCGGAGTTTGAATC CACCTCTGACAATTGTCCGGAAGACATTCGAATCCACGGAGAATCCAGACGACTTCCTGC CCTCTGTAATGACCTGTGTGAACTATCTCAAGTTGCCGGACTATTCGAGCATCGAGATCA TGCGGGAGAAGCTGTTGATGGCGGCAAGGGAAGGGCAGCAGTCGTTCCATCTGTCCTGAC CACAACGAGGAACGCAGTGTCTGCCTGTTACAGCAAAAGAGAAAAATCATGATTTCTTTT CTAAATGTATCACCTGAGTCAAGGAAACATGTTACGCCTTCTTGTTGTAGGAAAAACAGC TCGCAGATTATACAAGAGACACTTGGTTCATATTCATTCATGGCCCCATGGACTTAAAGT GATCAGGCCCTAAAACGTTGTTGTGATGAGGTTTCTTTAGCAAGTTCTTGTTTAAATTAT CATTTATTTGATGAGTGAAGTTTTTAACTTGCTTTGCTGTGTGAAAATTTAAAAAAAAAA AAAAGGATGTTTTTCCAGGCTGATACAATAAATGTCGCTGTGCAGTTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCATTTGATCGGGATCGAGCAATGCAGAGATTACTTGATACCAACCCAGAAATCAACC AGTCTGATTCTCAAGATAGCAGAGTTGCACCTAGATTGGATAGAAAAAAACGTACTGTGA ACCGAGAGGAGCTGTTGAAACAAGCAGAGTCTGTGATGCAGGATCTTGGCAGCTCCCGGG CCATGTTGGAAATCCAGTATGAAAATGAGGTTGGCACAGGGCTTGGGCCTACACTGGAGT TTTATGCACTTGTATCTCAGGAACTACAGAGAGCTGACCTGGGTCTCTGGAGAGGTGAAG AAGTAACTCTTAGCAATCCAAAAGGAAGCCAAGAAGGGACCAAGTATATTCAAAACCTCC AAGGCCTGTTTGCACTTCCCTTTGGTAGAACAGCTAAGCCAGCTCATATCGCAAAGGTTA AGATGAAGTTTCGCTTCTTAGGAAAATTAATGGCCAAGGCTATCATGGATTTCAGATTGG TGGACCTTCCCCTGGGCTTACCTTTTTATAAGTGGATGCTCCGGCAAGAAACTTCGCTGA CGTCACACGATTTGTTTGACGTTGACCCGGTTGTAGCCAGATCCGTGTATCACCTAGAAG ACATTGTCAGACAGAAGAAAAGACTTGAACAAGATAAATCCCAGACCAAAGAGAGTCTAC AGTATGCATTGGAAACCCTGACCATGAACGGTTGCTCAGTGGAGGATCTAGGGCTGGACT TCACACTGCCAGGATTCCCCAACATCGAACTGAAGAAGGGCGGCAAGGACATACCCGTTA CCATCCACAACTTAGAGGAGTATCTCAGACTGGTTATATTCTGGGCACTGAATGAAGGCG TTTCCAGGCAGTTCGATTCATTCAGAGATGGCTTCGAGTCAGTCTTCCCGCTCAGTCACC TGCAGTACTTCTATCCCGAAGAGCTGGACCAGCTCCTGTGTGGCAGTAAAGCGGACACCT GGGATGCCAAGACTCTGATGGAGTGCTGCAGGCCGGACCACGGCTACACGCACGACAGTC GGGCTGTGAAGTTCTTGTTTGAGATTCTCAGTAGTTTTGATAATGAGCAGCAGAGGTTAT TTCTCCAGTTTGTGACAGGTAGCCCGAGATTGCCTGTTGGAGGCTTCCGGAGTTTGAATC CACCTCTGACAATTGTCCGGAAGACATTCGAATCCACGGAGAATCCAGACGACTTCCTGC CCTCTGTAATGACCTGTGTGAACTATCTCAAGTTGCCGGACTATTCGAGCATCGAGATCA TGCGGGAGAAGCTGTTGATGGCGGCAAGGGAAGGGCAGCAGTCGTTCCATCTGTCCTGAC CACAACGAGGAACGCAGTGTCTGCCTGTTACAGCAAAAGAGAAAAATCATGATTTCTTTT CTAAATGTATCACCTGAGTCAAGGAAACATGTTACGCCTTCTTGTTGTAGGAAAAACAGC TCGCAGATTATACAAGAGACACTTGGTTCATATTCATTCATGGCCCCATGGACTTAAAGT GATCAGGCCCTAAAACGTTGTTGTGATGAGGTTTCTTTAGCAAGTTCTTGTTTAAATTAT CATTTATTTGATGAGTGAAGTTTTTAACTTGCTTTGCTGTGTGAAAATTTAAAAAAAAAA AAAAGGATGTTTTTCCAGGCTGATACAATAAATGTCGCTGTGCAGTTTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1480-1639, + strand, RNAz p=0.697941 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1480-1639, + strand, RNAz p=0.697941 |
| Aligned organism(s): 45 entry(ies) | More info |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr2 (69963842-69963733) | |
| 1-110, gnl|Hg17|chr2 (230477835-230477726) | |
| 1-110, gnl|Mm7|chr1 (84952324-84952215) | |
| 111-220, gnl|bosTau2|chr2 (69959957-69959848) | |
| 111-220, gnl|Hg17|chr2 (230476076-230475968) | |
| 111-220, gnl|Mm7|chr1 (84950617-84950508) | |
| 323-481, gnl|bosTau2|chr2 (69954086-69953928) | |
| 323-481, gnl|canFam2|chr25 (45069251-45069430) | |
| 323-481, gnl|danRer3|chr18 (44220141-44219964) | |
| 323-481, gnl|echTel1|scaffold_325271 (52588-52767) | |
| 323-481, gnl|fr1|chrUn (244963723-244963553) | |
| 323-481, gnl|galGal2|chr9 (3601029-3600853) | |
| 323-481, gnl|hg17|chr2 (230468642-230468821) | |
| 323-481, gnl|Hg17|chr2 (230468810-230468652) | |
| 323-481, gnl|loxAfr1|scaffold_34666 (13052-12876) | |
| 323-481, gnl|mm7|chr1 (84945148-84945327) | |
| 323-481, gnl|Mm7|chr1 (84945316-84945158) | |
| 323-481, gnl|monDom2|scaffold_28 (11508127-11508303) | |
| 323-481, gnl|oryCun1|scaffold_179470 (71863-72042) | |
| 323-481, gnl|panTro1|chr13 (121102211-121102390) | |
| 323-481, gnl|rheMac2|chr12 (93652462-93652641) | |
| 323-481, gnl|rn3|chr9 (84153350-84153529) | |
| 323-481, gnl|tetNig1|chrUn_random (46009956-46009786) | |
| 323-481, gnl|xenTro1|scaffold_108 (432731-432557) | |
| 643-812, gnl|bosTau2|chr2 (69949428-69949259) | |
| 643-812, gnl|canFam2|chr25 (45064939-45065114) | |
| 643-812, gnl|danRer3|chr18 (44225623-44225448) | |
| 643-812, gnl|dasNov1|scaffold_4569 (2424-2599) | |
| 643-812, gnl|echTel1|scaffold_325271 (49967-50142) | |
| 643-812, gnl|fr1|chrUn (244965127-244964958) | |
| 643-812, gnl|galGal2|chr9 (3603068-3602893) | |
| 643-812, gnl|hg17|chr2 (230464312-230464487) | |
| 643-812, gnl|Hg17|chr2 (230464484-230464315) | |
| 643-812, gnl|loxAfr1|scaffold_34666 (17470-17328) | |
| 643-812, gnl|mm7|chr1 (84941656-84941831) | |
| 643-812, gnl|Mm7|chr1 (84941828-84941659) | |
| 643-812, gnl|monDom2|scaffold_28 (11494638-11494813) | |
| 643-812, gnl|oryCun1|scaffold_179470 (61781-61956) | |
| 643-812, gnl|panTro1|chr13 (121097880-121098055) | |
| 643-812, gnl|rheMac2|chr12 (93648048-93648223) | |
| 643-812, gnl|rn3|chr9 (84149357-84149532) | |
| 643-812, gnl|xenTro1|scaffold_108 (433316-433134) | |
| 1121-1670, gnl|bosTau2|chr2 (69945221-69944682) | |
| 1121-1670, gnl|Hg17|chr2 (230457973-230457433) | |
| 1121-1670, gnl|Mm7|chr1 (84938353-84937841) |
| Aligned organism(s): 45 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr2 (69963842-69963733) | |
| 1-110, gnl|Hg17|chr2 (230477835-230477726) | |
| 1-110, gnl|Mm7|chr1 (84952324-84952215) | |
| 111-220, gnl|bosTau2|chr2 (69959957-69959848) | |
| 111-220, gnl|Hg17|chr2 (230476076-230475968) | |
| 111-220, gnl|Mm7|chr1 (84950617-84950508) | |
| 323-481, gnl|bosTau2|chr2 (69954086-69953928) | |
| 323-481, gnl|canFam2|chr25 (45069251-45069430) | |
| 323-481, gnl|danRer3|chr18 (44220141-44219964) | |
| 323-481, gnl|echTel1|scaffold_325271 (52588-52767) | |
| 323-481, gnl|fr1|chrUn (244963723-244963553) | |
| 323-481, gnl|galGal2|chr9 (3601029-3600853) | |
| 323-481, gnl|hg17|chr2 (230468642-230468821) | |
| 323-481, gnl|Hg17|chr2 (230468810-230468652) | |
| 323-481, gnl|loxAfr1|scaffold_34666 (13052-12876) | |
| 323-481, gnl|mm7|chr1 (84945148-84945327) | |
| 323-481, gnl|Mm7|chr1 (84945316-84945158) | |
| 323-481, gnl|monDom2|scaffold_28 (11508127-11508303) | |
| 323-481, gnl|oryCun1|scaffold_179470 (71863-72042) | |
| 323-481, gnl|panTro1|chr13 (121102211-121102390) | |
| 323-481, gnl|rheMac2|chr12 (93652462-93652641) | |
| 323-481, gnl|rn3|chr9 (84153350-84153529) | |
| 323-481, gnl|tetNig1|chrUn_random (46009956-46009786) | |
| 323-481, gnl|xenTro1|scaffold_108 (432731-432557) | |
| 643-812, gnl|bosTau2|chr2 (69949428-69949259) | |
| 643-812, gnl|canFam2|chr25 (45064939-45065114) | |
| 643-812, gnl|danRer3|chr18 (44225623-44225448) | |
| 643-812, gnl|dasNov1|scaffold_4569 (2424-2599) | |
| 643-812, gnl|echTel1|scaffold_325271 (49967-50142) | |
| 643-812, gnl|fr1|chrUn (244965127-244964958) | |
| 643-812, gnl|galGal2|chr9 (3603068-3602893) | |
| 643-812, gnl|hg17|chr2 (230464312-230464487) | |
| 643-812, gnl|Hg17|chr2 (230464484-230464315) | |
| 643-812, gnl|loxAfr1|scaffold_34666 (17470-17328) | |
| 643-812, gnl|mm7|chr1 (84941656-84941831) | |
| 643-812, gnl|Mm7|chr1 (84941828-84941659) | |
| 643-812, gnl|monDom2|scaffold_28 (11494638-11494813) | |
| 643-812, gnl|oryCun1|scaffold_179470 (61781-61956) | |
| 643-812, gnl|panTro1|chr13 (121097880-121098055) | |
| 643-812, gnl|rheMac2|chr12 (93648048-93648223) | |
| 643-812, gnl|rn3|chr9 (84149357-84149532) | |
| 643-812, gnl|xenTro1|scaffold_108 (433316-433134) | |
| 1121-1670, gnl|bosTau2|chr2 (69945221-69944682) | |
| 1121-1670, gnl|Hg17|chr2 (230457973-230457433) | |
| 1121-1670, gnl|Mm7|chr1 (84938353-84937841) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cte (0.87822) | |
| sme (0.610874) | |
| che (0.545256) | |
| tes (0.415628) | |
| sto (0.359648) | |
| fat (0.294855) | |
| lin (0.291206) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| cty (0.20816) | |
| aor (0.195274) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| ski (0.146735) | |
| cst (0.140036) | |
| ste (0.135208) | |
| ret (0.128733) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.87822) | |
| sme (0.610874) | |
| che (0.545256) | |
| tes (0.415628) | |
| sto (0.359648) | |
| fat (0.294855) | |
| lin (0.291206) | |
| pla (0.267344) | |
| lyg (0.266205) | |
| bla (0.248694) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| pgl (0.236967) | |
| cty (0.20816) | |
| aor (0.195274) | |
| mcp (0.170648) | |
| cje (0.165235) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| ski (0.146735) | |
| cst (0.140036) | |
| ste (0.135208) | |
| ret (0.128733) | |
| ecc (0.115035) | |
| spc (0.113366) |