Non-Coding RNA Search

Ss1.1-Mixc-0029,e02.3

Sequence:


               
               GCCAAATGCAATAGTTTGCATCTAACACTGTGGATAAACTTTTTGAATATATCTAATGAT
CTTCTTAAAAGAGCAAAGAAACTTTAAGCAGACTTAATCACGTTCTAAAAGCATATAGTC
AGAGACAGACCAACTGTGATTGCTCTGTGGTGTGCGAGGGCATGGGGAGACCAGGCTCCC
TAACTAGATGTTTGTGAAAATAGTTTTCTCTTTGGTGCCGTTAGGACATGTGTATGGGCC
TCTCACTATCCCTTAACATTTTCACATGCCAGAGGCTGGAAGTCCGCTTTTTTAAGTCAT
TCAGGTGGTCTGAGTCACAACATGCCGCTGAGTTGTTTTTCTGATAGTGATGATCTAATC
TGCGGATCCGTCCACACGGTCTCCATCATCAGCATCGTGCGTCGTAAGACGAGGTGGCAT
TTTGGAAAGAGCCCTGGGCTGGCCGTTGGAATAGCTGGACCTGACCTCAGCAGCATCACT
TACAGACATCTGATGTTTTGACACTAACGCTGCTCCCTAATCGGTCTGAGTCTCAGCTCC
TTTCTCTGTAATCTGGAGATGCTAATGGCTGGCCTCACTGCCTTTCATAGTTGTAGTGAA
AACATGGAACATGGAAAGTATGTGAAAGTACTTTGAAAAATATAAAAGTTACTTTAATTA
AAAGTAACAATATAAAGTAGATGCCTTCTGGAATCCTATCTTTATCAGTGCTTTACAACC
TGATGTAGATTCTCGGTTACTAAGCCAGTATCTAGGTATCAGTATCATTTAACAGGCCTT
CTATCCTGAATAACTAGCATGGAAACGTAAACATTTTCATGTGCAGGTATGGCTATGGAG
ACTTACAACTTTGCGCGTTCCCTGCCTACGTGGTCAGTTCCTTTTAGTTCGGTGGGACCT
CACTCACAGTGTGATTGCATCTTTGTGTTAGAGGCATGTGAAAGAGGTGTATTTTTCCTC
TCCAGTCTCCTCTTTTGCATTCATGGAGCCAGCCAACCTCATTGTTTGGTTCCCATTACA
TTGTTGATTCATCAGATCAAAAAGCAGCAAAATAGAGTCCCAGGATGTTGTGACGCACCA
GCACAGCTTTGTTTTGGAAATTATTCAATTTAGAAAAGAGAAACTGGTGGAAATTGGAGC
TAGAAGGAGCTCTACAAATTCTCTAGTTCAATTTTCTCTTATTTTCAGCTTTACAGACTA
GAATAACTTAAAAGAACTTTAATTCTGCCAGTATCACAAAGCTATTTAATAATAAAATCG
GTATCACTACCATGGCCTTCTGACTCCTAGCCCAGTGCTTTTTCTTATCTTACAGCTAGT
CGTTGAGGTAAGAGTCAAACCATTGCCCATTCAGCCTCTCCATCCTCCCAGAGAAAACCA
TGGGACTAAGATAAATTGAAATAGAGCAAAAGTGACAGGTGTAGTAAAGGAAGAAAGGAT
TCTGAAATTCCACAAAACATTTAAAAAATTTTTTATTAAAATATAATTTACAGTGTTCTG
TCAATTTCTGCTGTGTAGCAAATGACCCAGTCACACCCACAAAACACTTTTAAGCTCGTT
TCTTCAGAATGATTTTATCACAAACATGTCATTGGAAAATATAATTTGCATATATGTTCC
TAATGTGATATTAAATGTTTGTTTCTTAACCCCGATGCCGTGAAGAGTGTCAGAGCAGCA
TCTCAGCTTCCGTCTTCCTGGAGTCCTAAGTGACTTAATTCCTGTACGACTTTGCTTTTG
CGTGGTCCAAACATGCAGTTTTGAACCCACAGCAGTGGTGATTCACATTCTTATTTCCAC
TTGTGCATAATAAACTACGTGTCCTTTGTAATGTATTTGAATCTAAATATAATCTAAAGA
AGTGTTATTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAAATGCAATAGTTTGCATCTAACACTGTGGATAAACTTTTTGAATATATCTAATGAT
CTTCTTAAAAGAGCAAAGAAACTTTAAGCAGACTTAATCACGTTCTAAAAGCATATAGTC
AGAGACAGACCAACTGTGATTGCTCTGTGGTGTGCGAGGGCATGGGGAGACCAGGCTCCC
TAACTAGATGTTTGTGAAAATAGTTTTCTCTTTGGTGCCGTTAGGACATGTGTATGGGCC
TCTCACTATCCCTTAACATTTTCACATGCCAGAGGCTGGAAGTCCGCTTTTTTAAGTCAT
TCAGGTGGTCTGAGTCACAACATGCCGCTGAGTTGTTTTTCTGATAGTGATGATCTAATC
TGCGGATCCGTCCACACGGTCTCCATCATCAGCATCGTGCGTCGTAAGACGAGGTGGCAT
TTTGGAAAGAGCCCTGGGCTGGCCGTTGGAATAGCTGGACCTGACCTCAGCAGCATCACT
TACAGACATCTGATGTTTTGACACTAACGCTGCTCCCTAATCGGTCTGAGTCTCAGCTCC
TTTCTCTGTAATCTGGAGATGCTAATGGCTGGCCTCACTGCCTTTCATAGTTGTAGTGAA
AACATGGAACATGGAAAGTATGTGAAAGTACTTTGAAAAATATAAAAGTTACTTTAATTA
AAAGTAACAATATAAAGTAGATGCCTTCTGGAATCCTATCTTTATCAGTGCTTTACAACC
TGATGTAGATTCTCGGTTACTAAGCCAGTATCTAGGTATCAGTATCATTTAACAGGCCTT
CTATCCTGAATAACTAGCATGGAAACGTAAACATTTTCATGTGCAGGTATGGCTATGGAG
ACTTACAACTTTGCGCGTTCCCTGCCTACGTGGTCAGTTCCTTTTAGTTCGGTGGGACCT
CACTCACAGTGTGATTGCATCTTTGTGTTAGAGGCATGTGAAAGAGGTGTATTTTTCCTC
TCCAGTCTCCTCTTTTGCATTCATGGAGCCAGCCAACCTCATTGTTTGGTTCCCATTACA
TTGTTGATTCATCAGATCAAAAAGCAGCAAAATAGAGTCCCAGGATGTTGTGACGCACCA
GCACAGCTTTGTTTTGGAAATTATTCAATTTAGAAAAGAGAAACTGGTGGAAATTGGAGC
TAGAAGGAGCTCTACAAATTCTCTAGTTCAATTTTCTCTTATTTTCAGCTTTACAGACTA
GAATAACTTAAAAGAACTTTAATTCTGCCAGTATCACAAAGCTATTTAATAATAAAATCG
GTATCACTACCATGGCCTTCTGACTCCTAGCCCAGTGCTTTTTCTTATCTTACAGCTAGT
CGTTGAGGTAAGAGTCAAACCATTGCCCATTCAGCCTCTCCATCCTCCCAGAGAAAACCA
TGGGACTAAGATAAATTGAAATAGAGCAAAAGTGACAGGTGTAGTAAAGGAAGAAAGGAT
TCTGAAATTCCACAAAACATTTAAAAAATTTTTTATTAAAATATAATTTACAGTGTTCTG
TCAATTTCTGCTGTGTAGCAAATGACCCAGTCACACCCACAAAACACTTTTAAGCTCGTT
TCTTCAGAATGATTTTATCACAAACATGTCATTGGAAAATATAATTTGCATATATGTTCC
TAATGTGATATTAAATGTTTGTTTCTTAACCCCGATGCCGTGAAGAGTGTCAGAGCAGCA
TCTCAGCTTCCGTCTTCCTGGAGTCCTAAGTGACTTAATTCCTGTACGACTTTGCTTTTG
CGTGGTCCAAACATGCAGTTTTGAACCCACAGCAGTGGTGATTCACATTCTTATTTCCAC
TTGTGCATAATAAACTACGTGTCCTTTGTAATGTATTTGAATCTAAATATAATCTAAAGA
AGTGTTATTATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               694-805, - strand, RNAz p=0.739801

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               694-805, - strand, RNAz p=0.739801

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               24-1028, gnl|bosTau2|chr12 (11227775-11228786)
               

               
               24-1028, gnl|Hg17|chr13 (51503464-51504763)
               


               
               1125-1492, gnl|bosTau2|chr12 (11228872-11229231)
               

               
               1125-1492, gnl|Hg17|chr13 (51504850-51505205)
               

               
               1125-1492, gnl|Mm7|chr8 (20853716-20854053)
               


               
               1615-1856, gnl|bosTau2|chr12 (11229291-11229539)
               

               
               1615-1856, gnl|Hg17|chr13 (51505260-51505541)
               

               
               1615-1856, gnl|Mm7|chr8 (20854083-20854354)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-1028, gnl|bosTau2|chr12 (11227775-11228786)
               

               
               24-1028, gnl|Hg17|chr13 (51503464-51504763)
               


               
               1125-1492, gnl|bosTau2|chr12 (11228872-11229231)
               

               
               1125-1492, gnl|Hg17|chr13 (51504850-51505205)
               

               
               1125-1492, gnl|Mm7|chr8 (20853716-20854053)
               


               
               1615-1856, gnl|bosTau2|chr12 (11229291-11229539)
               

               
               1615-1856, gnl|Hg17|chr13 (51505260-51505541)
               

               
               1615-1856, gnl|Mm7|chr8 (20854083-20854354)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fat (0.294855)
               

               
               ski (0.29347)
               

               
               tra (0.246184)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               nca (0.136874)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	24-1028, gnl\|bosTau2\|chr12 (11227775-11228786)
	24-1028, gnl\|Hg17\|chr13 (51503464-51504763)

	1125-1492, gnl\|bosTau2\|chr12 (11228872-11229231)
	1125-1492, gnl\|Hg17\|chr13 (51504850-51505205)
	1125-1492, gnl\|Mm7\|chr8 (20853716-20854053)

	1615-1856, gnl\|bosTau2\|chr12 (11229291-11229539)
	1615-1856, gnl\|Hg17\|chr13 (51505260-51505541)
	1615-1856, gnl\|Mm7\|chr8 (20854083-20854354)

	pro (0.512033)
	fat (0.294855)
	ski (0.29347)
	tra (0.246184)
	fcc (0.197785)
	gul (0.177588)
	rec (0.17307)
	nca (0.136874)
	ova (0.129132)
	cty (0.10408)