Non-Coding RNA Search

Ss1.1-Mixc-0029,e20.3

Sequence:


               
               GTAGCTAAACTTTGGGAAATATCAACAGGACGAACGCTGGTCAGATACACAGGCGCTGGC
TTGAGCGGACGGCAGGTGCACCGGACGCAGGCCGTGTTCAACCACACGGAGGACTACGTG
CTGCTGCCGGACGAAAGGACCATCAGCCTCTGCTGCTGGGACTCGCGGACGGCCGAGCGC
CGGAACCTGCTCTCCCTGGGCCACAACAACATCGTGCGCTGCATCGTGCACTCGCCCACC
AACCCCGGCTTCATGACCTGCAGCGACGACTTCCGGGCGCGGTTTTGGTACCGGAGGTCG
ACCACGGACTAGGGCCACCTGAGCTGCCCGCGTTAGCAGGGCCTTCCCTGAGGCCTCTGC
CCCTCCTTCCCCGGGCCCGTCACCAGCTCAGTAGTAAGTCGTTGTACCATCTTCGGCGGT
TGTGCCGCCACCTGTACGTGCGTCTGGAATTTGTACAAAAGAATCTTTTTTTACCTTGAT
GGAGAATCATGGTGGAAAAAGTTGGAAACAGATCTGTGCAGTTGTTCTGCATTCACTGAT
TATTCCAGTGTGATTTTCATCGGTTTTGTAAATACAGGACTAGCCGTTTCTCTTGACTCT
CTTGATCATTTGAAGAAGGATAGGGTATTAAAGTGTGTACTAGACTCAAGTGGATCTGCC
ATGAGGACTTGTCATTGGGATAATTTGTCACGTTTCCTGCCTGTTCTACATCCCCTTTGT
GTGCTTCCTTTCAAAATACACCTGGGCAGATAAGTAGGCATATGCAGCTCTGAGAATCAA
GAGTTTTGTGCCACATTAAAACCGCTTTAGAAAAATCCATCAATTCTATCTTAAAATTCT
GACAGTATTCTGACACATTCTGATAATAAAGCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGCTAAACTTTGGGAAATATCAACAGGACGAACGCTGGTCAGATACACAGGCGCTGGC
TTGAGCGGACGGCAGGTGCACCGGACGCAGGCCGTGTTCAACCACACGGAGGACTACGTG
CTGCTGCCGGACGAAAGGACCATCAGCCTCTGCTGCTGGGACTCGCGGACGGCCGAGCGC
CGGAACCTGCTCTCCCTGGGCCACAACAACATCGTGCGCTGCATCGTGCACTCGCCCACC
AACCCCGGCTTCATGACCTGCAGCGACGACTTCCGGGCGCGGTTTTGGTACCGGAGGTCG
ACCACGGACTAGGGCCACCTGAGCTGCCCGCGTTAGCAGGGCCTTCCCTGAGGCCTCTGC
CCCTCCTTCCCCGGGCCCGTCACCAGCTCAGTAGTAAGTCGTTGTACCATCTTCGGCGGT
TGTGCCGCCACCTGTACGTGCGTCTGGAATTTGTACAAAAGAATCTTTTTTTACCTTGAT
GGAGAATCATGGTGGAAAAAGTTGGAAACAGATCTGTGCAGTTGTTCTGCATTCACTGAT
TATTCCAGTGTGATTTTCATCGGTTTTGTAAATACAGGACTAGCCGTTTCTCTTGACTCT
CTTGATCATTTGAAGAAGGATAGGGTATTAAAGTGTGTACTAGACTCAAGTGGATCTGCC
ATGAGGACTTGTCATTGGGATAATTTGTCACGTTTCCTGCCTGTTCTACATCCCCTTTGT
GTGCTTCCTTTCAAAATACACCTGGGCAGATAAGTAGGCATATGCAGCTCTGAGAATCAA
GAGTTTTGTGCCACATTAAAACCGCTTTAGAAAAATCCATCAATTCTATCTTAAAATTCT
GACAGTATTCTGACACATTCTGATAATAAAGCTCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12848377|dbj|BAB27929.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12848377|dbj|BAB27929.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               437-594, + strand, RNAz p=0.982363

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-594, + strand, RNAz p=0.982363

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001324, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001324, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-844, gnl|bosTau2|chr13 (41015104-41014312)
               

               
               50-844, gnl|Hg17|chr20 (54411928-54412691)
               

               
               50-844, gnl|Mm7|chr2 (172173011-172173708)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-844, gnl|bosTau2|chr13 (41015104-41014312)
               

               
               50-844, gnl|Hg17|chr20 (54411928-54412691)
               

               
               50-844, gnl|Mm7|chr2 (172173011-172173708)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cag (0.302389)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	50-844, gnl\|bosTau2\|chr13 (41015104-41014312)
	50-844, gnl\|Hg17\|chr20 (54411928-54412691)
	50-844, gnl\|Mm7\|chr2 (172173011-172173708)