Non-Coding RNA Search

Ss1.1-Mixc-0029,f09.3

Sequence:


               
               ACACAGTGCAGAAGGCAGACAAAAAGACAGGGCAATGGTTCACGGTGCTGGAGCGCTACC
ACCCGACCACCTGCACCATCTCTGACCTCATCGTGGGCAACTCTTACTCCTTCCGGGTCT
TCTCGGAAAACCTGTGTGGACTCAGTGACTCGGCCGCTGTCACCAAAGAGCTCGCCCATA
TCCAGAAGACAGATATTGTTGCCAAACCTAAAAGCTTTGTTGAGCGAGACTTCTCAGAAG
CCCCTTCATTCACCCAACCCCTGGCTGACCACATCTCTACCCCTGGCTACAGTACTCAGC
TCTTCTGCAGTGTCCGAGCATCACCCAAGCCCAAGATCATCTGGATGAAAAACAAGATGA
ACATCCAGGGTGACCCCAAATACCGGGCCATCTCTGAGCAAGGTGTCTGTACCCTGGAGA
TCCGGAAACCCAGCCCCTTCGATTCCGGGGTCTATACCTGCAAGGCCATCAATGTGCTGG
GGGAGGCATCTGTGGACTGCCGGCTGGAGGTCAAAGCCTCAGCCACACACTGAAGAGCCC
CTGGAGGAGGCCGTGATGAGGAGAAAGGTGCTGCAGGCCTGAGGGGTCAGGGCAGCCGGG
CCTAGAATCAAGCTCCACGGATACCACAGATTCCCGTTTCCACAGTGACAGCTGATGGCT
TTGCTCCTTGGTACCTGCCAGCCCCCTTCCTCCCCCAAGAGTGGGCCTAGCAGGTCTCAG
GCCAGGCTTCCTGGACACAAGGGGCCCCAGAAGGTGCTAAGATTGGAGCACTGCTGCAGA
GAGTAGTGCGCTGGGCGTGAAGCACTTGAATAAAGGTGTGTGGTGTTACAGTACAGGTGC
CTCTGTGACAGTGAGCATCATCCGTGTGGGCACGGCCCTGTGTCACCATGAGGGGGATGT
TGAATGTGTCACTACGAGGGGGTCTCCACCTATGACACCACGAGGAAGGTGCTGGAGGGA
GGGAACGCAAGCCGTTATGGGTGTTTGCCGGGTATGAGATTTTTTAGGATCTCCTTTCAC
ATTTAGGGTTTGCTCCCCTAAGAGGATAACTATAGGAACAGACATGGCCTTCTCTGGAAC
ACTCCTTGCTCCAATCACCCCCAGATCCTACCTCTCTTCACTTCTCCTCCATCCCTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACAGTGCAGAAGGCAGACAAAAAGACAGGGCAATGGTTCACGGTGCTGGAGCGCTACC
ACCCGACCACCTGCACCATCTCTGACCTCATCGTGGGCAACTCTTACTCCTTCCGGGTCT
TCTCGGAAAACCTGTGTGGACTCAGTGACTCGGCCGCTGTCACCAAAGAGCTCGCCCATA
TCCAGAAGACAGATATTGTTGCCAAACCTAAAAGCTTTGTTGAGCGAGACTTCTCAGAAG
CCCCTTCATTCACCCAACCCCTGGCTGACCACATCTCTACCCCTGGCTACAGTACTCAGC
TCTTCTGCAGTGTCCGAGCATCACCCAAGCCCAAGATCATCTGGATGAAAAACAAGATGA
ACATCCAGGGTGACCCCAAATACCGGGCCATCTCTGAGCAAGGTGTCTGTACCCTGGAGA
TCCGGAAACCCAGCCCCTTCGATTCCGGGGTCTATACCTGCAAGGCCATCAATGTGCTGG
GGGAGGCATCTGTGGACTGCCGGCTGGAGGTCAAAGCCTCAGCCACACACTGAAGAGCCC
CTGGAGGAGGCCGTGATGAGGAGAAAGGTGCTGCAGGCCTGAGGGGTCAGGGCAGCCGGG
CCTAGAATCAAGCTCCACGGATACCACAGATTCCCGTTTCCACAGTGACAGCTGATGGCT
TTGCTCCTTGGTACCTGCCAGCCCCCTTCCTCCCCCAAGAGTGGGCCTAGCAGGTCTCAG
GCCAGGCTTCCTGGACACAAGGGGCCCCAGAAGGTGCTAAGATTGGAGCACTGCTGCAGA
GAGTAGTGCGCTGGGCGTGAAGCACTTGAATAAAGGTGTGTGGTGTTACAGTACAGGTGC
CTCTGTGACAGTGAGCATCATCCGTGTGGGCACGGCCCTGTGTCACCATGAGGGGGATGT
TGAATGTGTCACTACGAGGGGGTCTCCACCTATGACACCACGAGGAAGGTGCTGGAGGGA
GGGAACGCAAGCCGTTATGGGTGTTTGCCGGGTATGAGATTTTTTAGGATCTCCTTTCAC
ATTTAGGGTTTGCTCCCCTAAGAGGATAACTATAGGAACAGACATGGCCTTCTCTGGAAC
ACTCCTTGCTCCAATCACCCCCAGATCCTACCTCTCTTCACTTCTCCTCCATCCCTCATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               32-147, - strand, RNAz p=0.784833

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               32-147, - strand, RNAz p=0.784833

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               32-195, gnl|bosTau2|chr16 (2335883-2335720)
               

               
               32-195, gnl|canFam2|chr7 (3041703-3041584)
               

               
               32-195, gnl|danRer3|chr3 (25045183-25045302)
               

               
               32-195, gnl|dasNov1|scaffold_22856 (6158-6039)
               

               
               32-195, gnl|echTel1|scaffold_279622 (38694-38813)
               

               
               32-195, gnl|fr1|chrUn (245699279-245699398)
               

               
               32-195, gnl|galGal2|chr32 (115141-115022)
               

               
               32-195, gnl|hg17|chr1 (199871072-199871191)
               

               
               32-195, gnl|Hg17|chr1 (199871236-199871073)
               

               
               32-195, gnl|loxAfr1|scaffold_113553 (5009-5126)
               

               
               32-195, gnl|mm7|chr1 (134088351-134088232)
               

               
               32-195, gnl|Mm7|chr1 (134088185-134088348)
               

               
               32-195, gnl|monDom2|scaffold_13 (3201007-3201126)
               

               
               32-195, gnl|oryCun1|scaffold_206851 (91793-91674)
               

               
               32-195, gnl|panTro1|chr1 (182725562-182725681)
               

               
               32-195, gnl|rheMac2|chr1 (167264504-167264385)
               

               
               32-195, gnl|rn3|chr13 (47170161-47170042)
               

               
               32-195, gnl|tetNig1|chr5 (7407774-7407656)
               

               
               32-195, gnl|xenTro1|scaffold_250 (169448-169567)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-195, gnl|bosTau2|chr16 (2335883-2335720)
               

               
               32-195, gnl|canFam2|chr7 (3041703-3041584)
               

               
               32-195, gnl|danRer3|chr3 (25045183-25045302)
               

               
               32-195, gnl|dasNov1|scaffold_22856 (6158-6039)
               

               
               32-195, gnl|echTel1|scaffold_279622 (38694-38813)
               

               
               32-195, gnl|fr1|chrUn (245699279-245699398)
               

               
               32-195, gnl|galGal2|chr32 (115141-115022)
               

               
               32-195, gnl|hg17|chr1 (199871072-199871191)
               

               
               32-195, gnl|Hg17|chr1 (199871236-199871073)
               

               
               32-195, gnl|loxAfr1|scaffold_113553 (5009-5126)
               

               
               32-195, gnl|mm7|chr1 (134088351-134088232)
               

               
               32-195, gnl|Mm7|chr1 (134088185-134088348)
               

               
               32-195, gnl|monDom2|scaffold_13 (3201007-3201126)
               

               
               32-195, gnl|oryCun1|scaffold_206851 (91793-91674)
               

               
               32-195, gnl|panTro1|chr1 (182725562-182725681)
               

               
               32-195, gnl|rheMac2|chr1 (167264504-167264385)
               

               
               32-195, gnl|rn3|chr13 (47170161-47170042)
               

               
               32-195, gnl|tetNig1|chr5 (7407774-7407656)
               

               
               32-195, gnl|xenTro1|scaffold_250 (169448-169567)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ese (1.01202)
               

               
               nms (0.855432)
               

               
               ton (0.1755)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (1.01202)
               

               
               nms (0.855432)
               

               
               ton (0.1755)
               

               
               eru (0.120048)

	32-195, gnl\|bosTau2\|chr16 (2335883-2335720)
	32-195, gnl\|canFam2\|chr7 (3041703-3041584)
	32-195, gnl\|danRer3\|chr3 (25045183-25045302)
	32-195, gnl\|dasNov1\|scaffold_22856 (6158-6039)
	32-195, gnl\|echTel1\|scaffold_279622 (38694-38813)
	32-195, gnl\|fr1\|chrUn (245699279-245699398)
	32-195, gnl\|galGal2\|chr32 (115141-115022)
	32-195, gnl\|hg17\|chr1 (199871072-199871191)
	32-195, gnl\|Hg17\|chr1 (199871236-199871073)
	32-195, gnl\|loxAfr1\|scaffold_113553 (5009-5126)
	32-195, gnl\|mm7\|chr1 (134088351-134088232)
	32-195, gnl\|Mm7\|chr1 (134088185-134088348)
	32-195, gnl\|monDom2\|scaffold_13 (3201007-3201126)
	32-195, gnl\|oryCun1\|scaffold_206851 (91793-91674)
	32-195, gnl\|panTro1\|chr1 (182725562-182725681)
	32-195, gnl\|rheMac2\|chr1 (167264504-167264385)
	32-195, gnl\|rn3\|chr13 (47170161-47170042)
	32-195, gnl\|tetNig1\|chr5 (7407774-7407656)
	32-195, gnl\|xenTro1\|scaffold_250 (169448-169567)