Non-Coding RNA Search

Ss1.1-Mixc-0029,g12.3.5

Sequence:


               
               GAGCGGCTGATCGCAGTCCCGAGGGGAACTCTGAGCAGGTGGTACATTATGGCTGACATG
CAAAATCTGGTAGAAAGATTGGAGAGAGCAGTGGGCCGCCTGGAGGCAGTCTCCCATGCC
TCTGACACACACTGTGGATATGGAGACAGTGCTGCAAAAGCAGGAGCAGCTCCGTATGTG
CAAGCATTTGACTCACTGCTGGCCGGTCCTGTGGCGGAATACCTCAAGATCAGTAAAGAG
ATTGGGGGAGATGTGCAGAAACATGCGGAAATGGTCCATACAGGTCTGAAGTTGGAGCAA
GCTCTCTTGGTTACAGCCTCTCAGTGCCAGCAGCCTGTAGGTAATAAGCTTTCTGAATTG
TTGGCACCCATCTCCGAGCAGATCCAAGAAGTAATAACCTTTCGGGAGAAGAACCGAGGC
AGCAAGTTGTTCAATCACCTGTCAGCTGTCAGTGAAAGCATCCAGGCCCTGGGTTGGGTG
GCTATGGCTCCCAAGCCTGGTCCCTATGTGAAGGAAATGAATGATGCTGCCATGTTTTAT
ACAAACCGAGTCCTCAAGGAGTACAAAGATGTGGATAAGAAGCACGTGGACTGGGTCAAA
GCTTACTTGAGTATATGGACAGAGCTGCAGGCTTACATTAAGGAGTTCCATACGACTGGA
CTGGCCTGGAGCAAAACGGGGCCCGTGGCTAAAGAACTGAGTGGATTGCCATCTGGACCC
TCTGCTGGATCAGGTCCTCCTCCTCCTCCACCAGGCCCACCTCCTCCCCCAGTCCCCACC
AGTTCAGGCTCAGATGAGTCTGCCTCACGCTCAGCACTGTTTGCGCAGATTAATCAAGGG
GAGAGCATCACACACGCCCTGAAACACGTATCCGATGACATGAAGACTCACAAGAACCCT
GCTTTGAAGGCTCAGAGTGGGCCCGTACGAACTGGCCCCAAACCATTCTCTGCATCTAAA
CCTGGAATCAGCCCATCCCCCAAACCAGTCACAAAGAAGGAGCCAGCTCTACTTGAACTG
GAGGGCAAGAAGTGGAGAGTGGAAAATCAGGAGAATGTTTCCAACCTGGTGATAGATGAC
ACAGAGCTGAAACAGGTGGCTTACATATTCAAGTGCGTCAACTCGACATTGCAAATCAAG
GGCAAAATTAACTCCATTACAGTAGATAACTGTAAGAAACTCGGTCTGGTGTTCGATGAC
GTGGTGGGCATTGTGGAGATAATCAATAGTCGGGATGTCAAAGTTCAGGTAATGGGTAAA
GTGCCAACCATTTCGATCAACAAAACAGACGGCTGCCACATTTACCTGAGCAAGAATTCC
CTGGATTGTGAGATAGTCAGTGCCAAATCTTCTGAGATGAATGTCCTCATTCCTACAGAA
GGCGGTGACTTCAATGAGTTCCCAGTCCCTGAGCAGTTCAAGACCATATGGAATGGGCAG
AAGTTGGTCACCACAGTGACAGAAATTGCTGGATAAGCGAAGTGCCACTGGGTTCTTTGC
CCTCTCCCTCACACCGTGGGATAAATCTGTATCAAGATGGTTCTTTTCTAGATTTCCTCT
ACCTTTCTGCTCTTAAATGCTTCTCTGCTTTGAGAAGCACAGCTACCTGCCTTCACTGAA
ATATACCTCAGGCTGAGATTTGGGGTGGGATAGCAGGTCACTTGATCTTCAGCAGGAAGG
GGCAGCTTTTCCTTGTCAGCTCAACCACACCGCCCGTCCATTCTTAAGGAACCATAGACC
AGGACCGGGTATGTTTTAGCTTTCGGCCTTTGGGGTTATTTGACCAACAGAGTCTTTTGG
GAAGAAAAAAGAAACAGTCCCCAGGAATTAACAGATCAGAACATTCACACCAAGTTAATC
TTTCTCTAACAGTGAGCATGAAGGTAGCAGAAGCTGGTGTGATTCTAGCTGGTTCTTTTT
ACTTAAACTAATTTTCACTGTTGACAAGTTAAGGCGAGGGTTGCACAGGACCAAAGGCTG
AAGCTTGGCCATCTAGCATTCCAAGCAAAATGATTTCCTACAAGCATTCCTTTCCTTCTG
CATTCCATCCTGCGTCTGCCCGAAGCCCAGATCATAGGTTCTCCTGTGTTAGCTGCTGTG
GCGGTGCCCTGTACACAGGCCAGCTGAAGGAGTCTTGGACCCTTTCTCTCTCTGGGGCCC
CTGCCTAGCACCTTCCTACAGAGATGATTTTAAAGGAGAGAGAGAGAGAAAAGAAAACCA
CACCATTCCCAGGAATCTGGCTTCCCTTTCCTTCATGCTAGGTGCCCTTCCTCCATCTTC
GCTGCCTCCTTTGCCCCGTCATGCTCAACAGCTTTTGGCTTCTGTCTGGGCACCTCAACA
GAGGACTAAAATCTCCATTGCAGGCTGGTTTTAGGTCTTATGTAAGAATCTTGCACAGCA
CTGCTAATGTAAATTTCAGCTTTTCCTCTAGGACACTTTACCAAAATATGCAACTTTTTT
TGATGGGAAGAGAGACTGTCCTGTGACTTCTACCCATTTCCTGAGGCCTGTGGAAATAAA
CCTTTATGTACTTAAAGTTATACAGAAAATAGAATAAAATTAATACCAAACTCAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCTGATCGCAGTCCCGAGGGGAACTCTGAGCAGGTGGTACATTATGGCTGACATG
CAAAATCTGGTAGAAAGATTGGAGAGAGCAGTGGGCCGCCTGGAGGCAGTCTCCCATGCC
TCTGACACACACTGTGGATATGGAGACAGTGCTGCAAAAGCAGGAGCAGCTCCGTATGTG
CAAGCATTTGACTCACTGCTGGCCGGTCCTGTGGCGGAATACCTCAAGATCAGTAAAGAG
ATTGGGGGAGATGTGCAGAAACATGCGGAAATGGTCCATACAGGTCTGAAGTTGGAGCAA
GCTCTCTTGGTTACAGCCTCTCAGTGCCAGCAGCCTGTAGGTAATAAGCTTTCTGAATTG
TTGGCACCCATCTCCGAGCAGATCCAAGAAGTAATAACCTTTCGGGAGAAGAACCGAGGC
AGCAAGTTGTTCAATCACCTGTCAGCTGTCAGTGAAAGCATCCAGGCCCTGGGTTGGGTG
GCTATGGCTCCCAAGCCTGGTCCCTATGTGAAGGAAATGAATGATGCTGCCATGTTTTAT
ACAAACCGAGTCCTCAAGGAGTACAAAGATGTGGATAAGAAGCACGTGGACTGGGTCAAA
GCTTACTTGAGTATATGGACAGAGCTGCAGGCTTACATTAAGGAGTTCCATACGACTGGA
CTGGCCTGGAGCAAAACGGGGCCCGTGGCTAAAGAACTGAGTGGATTGCCATCTGGACCC
TCTGCTGGATCAGGTCCTCCTCCTCCTCCACCAGGCCCACCTCCTCCCCCAGTCCCCACC
AGTTCAGGCTCAGATGAGTCTGCCTCACGCTCAGCACTGTTTGCGCAGATTAATCAAGGG
GAGAGCATCACACACGCCCTGAAACACGTATCCGATGACATGAAGACTCACAAGAACCCT
GCTTTGAAGGCTCAGAGTGGGCCCGTACGAACTGGCCCCAAACCATTCTCTGCATCTAAA
CCTGGAATCAGCCCATCCCCCAAACCAGTCACAAAGAAGGAGCCAGCTCTACTTGAACTG
GAGGGCAAGAAGTGGAGAGTGGAAAATCAGGAGAATGTTTCCAACCTGGTGATAGATGAC
ACAGAGCTGAAACAGGTGGCTTACATATTCAAGTGCGTCAACTCGACATTGCAAATCAAG
GGCAAAATTAACTCCATTACAGTAGATAACTGTAAGAAACTCGGTCTGGTGTTCGATGAC
GTGGTGGGCATTGTGGAGATAATCAATAGTCGGGATGTCAAAGTTCAGGTAATGGGTAAA
GTGCCAACCATTTCGATCAACAAAACAGACGGCTGCCACATTTACCTGAGCAAGAATTCC
CTGGATTGTGAGATAGTCAGTGCCAAATCTTCTGAGATGAATGTCCTCATTCCTACAGAA
GGCGGTGACTTCAATGAGTTCCCAGTCCCTGAGCAGTTCAAGACCATATGGAATGGGCAG
AAGTTGGTCACCACAGTGACAGAAATTGCTGGATAAGCGAAGTGCCACTGGGTTCTTTGC
CCTCTCCCTCACACCGTGGGATAAATCTGTATCAAGATGGTTCTTTTCTAGATTTCCTCT
ACCTTTCTGCTCTTAAATGCTTCTCTGCTTTGAGAAGCACAGCTACCTGCCTTCACTGAA
ATATACCTCAGGCTGAGATTTGGGGTGGGATAGCAGGTCACTTGATCTTCAGCAGGAAGG
GGCAGCTTTTCCTTGTCAGCTCAACCACACCGCCCGTCCATTCTTAAGGAACCATAGACC
AGGACCGGGTATGTTTTAGCTTTCGGCCTTTGGGGTTATTTGACCAACAGAGTCTTTTGG
GAAGAAAAAAGAAACAGTCCCCAGGAATTAACAGATCAGAACATTCACACCAAGTTAATC
TTTCTCTAACAGTGAGCATGAAGGTAGCAGAAGCTGGTGTGATTCTAGCTGGTTCTTTTT
ACTTAAACTAATTTTCACTGTTGACAAGTTAAGGCGAGGGTTGCACAGGACCAAAGGCTG
AAGCTTGGCCATCTAGCATTCCAAGCAAAATGATTTCCTACAAGCATTCCTTTCCTTCTG
CATTCCATCCTGCGTCTGCCCGAAGCCCAGATCATAGGTTCTCCTGTGTTAGCTGCTGTG
GCGGTGCCCTGTACACAGGCCAGCTGAAGGAGTCTTGGACCCTTTCTCTCTCTGGGGCCC
CTGCCTAGCACCTTCCTACAGAGATGATTTTAAAGGAGAGAGAGAGAGAAAAGAAAACCA
CACCATTCCCAGGAATCTGGCTTCCCTTTCCTTCATGCTAGGTGCCCTTCCTCCATCTTC
GCTGCCTCCTTTGCCCCGTCATGCTCAACAGCTTTTGGCTTCTGTCTGGGCACCTCAACA
GAGGACTAAAATCTCCATTGCAGGCTGGTTTTAGGTCTTATGTAAGAATCTTGCACAGCA
CTGCTAATGTAAATTTCAGCTTTTCCTCTAGGACACTTTACCAAAATATGCAACTTTTTT
TGATGGGAAGAGAGACTGTCCTGTGACTTCTACCCATTTCCTGAGGCCTGTGGAAATAAA
CCTTTATGTACTTAAAGTTATACAGAAAATAGAATAAAATTAATACCAAACTCAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6I9U6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6I9U6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1489-1685, - strand, RNAz p=0.976197
               

               
               2074-2184, - strand, RNAz p=0.543576

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1489-1685, - strand, RNAz p=0.976197
               

               
               2074-2184, - strand, RNAz p=0.543576

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-2570, gnl|bosTau2|chr12 (5946192-5943642)
               

               
               1-2570, gnl|Hg17|chr3 (76565808-76568515)
               

               
               1-2570, gnl|Mm7|chr4 (122317101-122303705)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2570, gnl|bosTau2|chr12 (5946192-5943642)
               

               
               1-2570, gnl|Hg17|chr3 (76565808-76568515)
               

               
               1-2570, gnl|Mm7|chr4 (122317101-122303705)

Expressed library(ies): 50 entry(ies)

More info

Expressed library(ies): 50 entry(ies)

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               cty (1.76936)
               

               
               ill (1.05356)
               

               
               amn (0.835422)
               

               
               clu (0.717875)
               

               
               cbl (0.573987)
               

               
               pla (0.534688)
               

               
               gul (0.532765)
               

               
               duo (0.518403)
               

               
               fhi (0.508733)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               cly (0.482567)
               

               
               ece (0.45861)
               

               
               cov (0.396458)
               

               
               ese (0.379507)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               eye (0.341006)
               

               
               nco (0.323468)
               

               
               nbm (0.297974)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 50 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (1.76936)
               

               
               ill (1.05356)
               

               
               amn (0.835422)
               

               
               clu (0.717875)
               

               
               cbl (0.573987)
               

               
               pla (0.534688)
               

               
               gul (0.532765)
               

               
               duo (0.518403)
               

               
               fhi (0.508733)
               

               
               eep (0.490256)
               

               
               csp (0.483559)
               

               
               cly (0.482567)
               

               
               ece (0.45861)
               

               
               cov (0.396458)
               

               
               ese (0.379507)
               

               
               bla (0.373042)
               

               
               fty (0.351679)
               

               
               rec (0.346141)
               

               
               mcp (0.341297)
               

               
               eye (0.341006)
               

               
               nco (0.323468)
               

               
               nbm (0.297974)
               

               
               cte (0.29274)
               

               
               hyp (0.285673)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               pgl (0.236967)
               

               
               ebs (0.236602)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               tra (0.123092)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1489-1685, - strand, RNAz p=0.976197
	2074-2184, - strand, RNAz p=0.543576

	1-2570, gnl\|bosTau2\|chr12 (5946192-5943642)
	1-2570, gnl\|Hg17\|chr3 (76565808-76568515)
	1-2570, gnl\|Mm7\|chr4 (122317101-122303705)

	cty (1.76936)
	ill (1.05356)
	amn (0.835422)
	clu (0.717875)
	cbl (0.573987)
	pla (0.534688)
	gul (0.532765)
	duo (0.518403)
	fhi (0.508733)
	eep (0.490256)
	csp (0.483559)
	cly (0.482567)
	ece (0.45861)
	cov (0.396458)
	ese (0.379507)
	bla (0.373042)
	fty (0.351679)
	rec (0.346141)
	mcp (0.341297)
	eye (0.341006)
	nco (0.323468)
	nbm (0.297974)
	cte (0.29274)
	hyp (0.285673)
	fce (0.271592)
	nmm (0.265604)
	sug (0.254582)
	eru (0.240096)
	pgl (0.236967)
	ebs (0.236602)
	hea (0.204499)
	col (0.195008)
	nlu (0.191681)
	ton (0.1755)
	cut (0.169924)
	nje (0.16592)
	cje (0.165235)
	spl (0.143184)
	pty (0.142714)
	lnt (0.142308)
	csk (0.140746)
	nca (0.136874)
	ute (0.132784)
	ova (0.129132)
	tra (0.123092)
	med (0.116252)
	ecc (0.115035)
	jca (0.11396)
	spc (0.113366)
	eje (0.0988338)