Ss1.1-Mixc-0029,h23.3
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AGTCTTGCCGAAAGCTAGAGCTTGGACTAAGAGAAGAGCTGCGTTATATGTTTTCCATAC
TTCAAACCTTAGCAGAAGCTGAGGCCTGTGTTGAGCTGAGACACATTACAGGTAATGTGT
AGGTTGGAATGTCCCAGTTTAAAGCGTGTGATAGGTGGTTCTGTTTTTCCTTGCCCCTGT
ATGAAAATAGGTCCTAAATGACTGACTTCACTGCATTAGACCCCATAAGGTCTCACCAAA
CACTTTGTACCCAGCTGTCACTCACTCAGCCACTTCCTTGCAGCAGAGCAGGGCTGAGGG
GAGGGAATTATGTTTATGTACTTGTTCACAGGGCAGGGAAAATCTTATGCTGCTCCATCA
TGAACTGACACCAATGCCCAGCAATCACTCTTTCCCCCTCTCGTGTCCAGCACCTACATG
TAGAGGTCGGGCCACTGACACTTGGGCTGCTGCTGGGAGGCCCGGGCTGTTTTTTTCTTA
TATTTTGTAATACTGTACAACCAAATCTACCCTCCAAGGCCCTGGGGTCTTATTGGTTCC
ACTGATTGAAAGCTCTTTCTCTTCCATGGACTGTAGTTTAAGCCCAGCAGGAAAGAGAAA
TGGGGAGGGGAAAGAGTACCATCCTTCTTCCAGGCCCCTGACTGCTCCTTTGCATTGGGC
CATGGTTTGTACCTACCACACCATGCATGATTCAGATGCCCTCAGGTCACTTTCTCTAAG
GTATGTATCCTCTGTGTGTTTGGGTTGAAGCACCTGACATTAAAGGAAGGATTTGGAGAG
ATGTTACATTGGGTGTGTCCATCTGAGAGTTGTGATCACCAAGAATCTCCCACAGGTACA
GAATTCCTATTTTAAGGTGTATGAACTTTTGTAAACAGGTTCCTGGCTGCCCCTTTCCTT
ATAAGGTCTTGCCTTTATAAGAGAATGCTTCCCTAGGGAGCTGCTTGTCCCTTTCTGTAG
AAATTTTGCCCTAAGCTCTTAAAGCAGTTCCATCTTATAACTTGCAAGCCTGCCCCCTAG
AGACTTATTTTTAAGCCTCTTAGGTACCACACCTGCAATATGGGAAACTGCCACCTGGGG
GATGATGTCTTGAGTAGACCACAAGTCAGATTATTGTGTTCAGATTAGATCCATGGTAAT
GACAGAGCATTTACTATTAAAGAGTTGCTTTTTCAATAATAAAATTGGTAATGTTTTAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
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AGTCTTGCCGAAAGCTAGAGCTTGGACTAAGAGAAGAGCTGCGTTATATGTTTTCCATAC
TTCAAACCTTAGCAGAAGCTGAGGCCTGTGTTGAGCTGAGACACATTACAGGTAATGTGT
AGGTTGGAATGTCCCAGTTTAAAGCGTGTGATAGGTGGTTCTGTTTTTCCTTGCCCCTGT
ATGAAAATAGGTCCTAAATGACTGACTTCACTGCATTAGACCCCATAAGGTCTCACCAAA
CACTTTGTACCCAGCTGTCACTCACTCAGCCACTTCCTTGCAGCAGAGCAGGGCTGAGGG
GAGGGAATTATGTTTATGTACTTGTTCACAGGGCAGGGAAAATCTTATGCTGCTCCATCA
TGAACTGACACCAATGCCCAGCAATCACTCTTTCCCCCTCTCGTGTCCAGCACCTACATG
TAGAGGTCGGGCCACTGACACTTGGGCTGCTGCTGGGAGGCCCGGGCTGTTTTTTTCTTA
TATTTTGTAATACTGTACAACCAAATCTACCCTCCAAGGCCCTGGGGTCTTATTGGTTCC
ACTGATTGAAAGCTCTTTCTCTTCCATGGACTGTAGTTTAAGCCCAGCAGGAAAGAGAAA
TGGGGAGGGGAAAGAGTACCATCCTTCTTCCAGGCCCCTGACTGCTCCTTTGCATTGGGC
CATGGTTTGTACCTACCACACCATGCATGATTCAGATGCCCTCAGGTCACTTTCTCTAAG
GTATGTATCCTCTGTGTGTTTGGGTTGAAGCACCTGACATTAAAGGAAGGATTTGGAGAG
ATGTTACATTGGGTGTGTCCATCTGAGAGTTGTGATCACCAAGAATCTCCCACAGGTACA
GAATTCCTATTTTAAGGTGTATGAACTTTTGTAAACAGGTTCCTGGCTGCCCCTTTCCTT
ATAAGGTCTTGCCTTTATAAGAGAATGCTTCCCTAGGGAGCTGCTTGTCCCTTTCTGTAG
AAATTTTGCCCTAAGCTCTTAAAGCAGTTCCATCTTATAACTTGCAAGCCTGCCCCCTAG
AGACTTATTTTTAAGCCTCTTAGGTACCACACCTGCAATATGGGAAACTGCCACCTGGGG
GATGATGTCTTGAGTAGACCACAAGTCAGATTATTGTGTTCAGATTAGATCCATGGTAAT
GACAGAGCATTTACTATTAAAGAGTTGCTTTTTCAATAATAAAATTGGTAATGTTTTAAA |
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1-122, - strand, RNAz p=0.982856 |
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37-144, - strand, RNAz p=0.936788 |
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510-664, - strand, RNAz p=0.991484 |
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516-639, - strand, RNAz p=0.947195 |
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948-1151, - strand, RNAz p=0.999993 |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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1-122, - strand, RNAz p=0.982856 |
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37-144, - strand, RNAz p=0.936788 |
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510-664, - strand, RNAz p=0.991484 |
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516-639, - strand, RNAz p=0.947195 |
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948-1151, - strand, RNAz p=0.999993 |
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1-72, CR850246 Normalized and Subtracted bovine endometrium tissues
(emb|CR850246.2|), blast E-value=8e-18, identity=94.44% |
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1-72, UMC-bcl_0A01-021-g05 Corpus Luteum (CL) bcl Bos taurus cDNA 3',
(gb|CX948196.1|), blast E-value=8e-18, identity=94.44% |
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1-72, UMC-bcl_0A02-028-c04 Day 14 CL +8h prostaglandin F2-alpha bcl Bos
(gb|CX949304.1|), blast E-value=8e-18, identity=94.44% |
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1-72, Hw_liver_27_050721_D02 Bos taurus CF-24-HW liver cDNA library Bos
(gb|DV782714.1|), blast E-value=8e-18, identity=94.44% |
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1-72, 1450328 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY453962.1|),
blast E-value=8e-18, identity=94.44% |
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1-72, 1604306 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY464147.1|),
blast E-value=8e-18, identity=94.44% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
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1-72, CR850246 Normalized and Subtracted bovine endometrium tissues
(emb|CR850246.2|), blast E-value=8e-18, identity=94.44% |
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1-72, UMC-bcl_0A01-021-g05 Corpus Luteum (CL) bcl Bos taurus cDNA 3',
(gb|CX948196.1|), blast E-value=8e-18, identity=94.44% |
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1-72, UMC-bcl_0A02-028-c04 Day 14 CL +8h prostaglandin F2-alpha bcl Bos
(gb|CX949304.1|), blast E-value=8e-18, identity=94.44% |
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1-72, Hw_liver_27_050721_D02 Bos taurus CF-24-HW liver cDNA library Bos
(gb|DV782714.1|), blast E-value=8e-18, identity=94.44% |
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1-72, 1450328 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY453962.1|),
blast E-value=8e-18, identity=94.44% |
|
1-72, 1604306 MARC 11BOV Bos taurus cDNA 5', mRNA sequence (gb|DY464147.1|),
blast E-value=8e-18, identity=94.44% |
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1-888, gnl|bosTau2|chr2 (79974376-79973485) |
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1-888, gnl|canFam2|chr2 (77009550-77008733) |
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1-888, gnl|dasNov1|scaffold_5367 (58559-59389) |
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1-888, gnl|echTel1|scaffold_307079 (33778-32945) |
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1-888, gnl|hg17|chr1 (25842768-25843590) |
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1-888, gnl|Hg17|chr1 (25842769-25843689) |
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1-888, gnl|loxAfr1|scaffold_14145 (1392-579) |
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1-888, gnl|mm7|chr4 (133904761-133903980) |
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1-888, gnl|Mm7|chr4 (133904758-133903948) |
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1-888, gnl|monDom2|scaffold_91 (3194607-3195425) |
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1-888, gnl|oryCun1|scaffold_142444 (14500-15297) |
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1-888, gnl|panTro1|chr1 (26522138-26522961) |
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1-888, gnl|rheMac2|chr1 (28438417-28439245) |
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1-888, gnl|rn3|chr5 (153292991-153292213) |
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893-1151, gnl|bosTau2|chr2 (79973507-79973249) |
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893-1151, gnl|Hg17|chr1 (25843662-25844589) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
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1-888, gnl|bosTau2|chr2 (79974376-79973485) |
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1-888, gnl|canFam2|chr2 (77009550-77008733) |
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1-888, gnl|dasNov1|scaffold_5367 (58559-59389) |
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1-888, gnl|echTel1|scaffold_307079 (33778-32945) |
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1-888, gnl|hg17|chr1 (25842768-25843590) |
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1-888, gnl|Hg17|chr1 (25842769-25843689) |
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1-888, gnl|loxAfr1|scaffold_14145 (1392-579) |
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1-888, gnl|mm7|chr4 (133904761-133903980) |
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1-888, gnl|Mm7|chr4 (133904758-133903948) |
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1-888, gnl|monDom2|scaffold_91 (3194607-3195425) |
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1-888, gnl|oryCun1|scaffold_142444 (14500-15297) |
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1-888, gnl|panTro1|chr1 (26522138-26522961) |
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1-888, gnl|rheMac2|chr1 (28438417-28439245) |
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1-888, gnl|rn3|chr5 (153292991-153292213) |
| |
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893-1151, gnl|bosTau2|chr2 (79973507-79973249) |
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893-1151, gnl|Hg17|chr1 (25843662-25844589) |
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pro (0.512033) |
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cte (0.29274) |
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hlv (0.278513) |
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ebs (0.236602) |
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cty (0.20816) |
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tes (0.207814) |
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fbs (0.175346) |
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eye (0.170503) |
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fat (0.147427) |
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lin (0.145603) |
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lnt (0.142308) |
|
ute (0.132784) |
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cov (0.132153) |
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sug (0.127291) |
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jca (0.11396) |
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pro (0.512033) |
|
cte (0.29274) |
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hlv (0.278513) |
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ebs (0.236602) |
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cty (0.20816) |
|
tes (0.207814) |
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fbs (0.175346) |
|
eye (0.170503) |
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fat (0.147427) |
|
lin (0.145603) |
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lnt (0.142308) |
|
ute (0.132784) |
|
cov (0.132153) |
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sug (0.127291) |
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jca (0.11396) |
