Non-Coding RNA Search

Ss1.1-Mixc-0029,j07.3

Sequence:


               
               GGAGCACAGGAGTCAGGCCCAGGCCCCACCGTCCTCACATTCCTGGGGTCATGAGACGCT
GCCCAGCCCCACTCCCAAGTGGGTAGGGAGCAGCCATGGCCCCGTAGGTATCCGGGTGTG
GTGGCCCCTCTGGGACAGGGGCTACCCCAACAAGGCCCCCGCCTGGCTGGGCGCAGCTTG
CTCTGGGTGAGGGGAGGCAGAAAAGCACTGACACGGTAGAGGAGGGGGTGCCCGGCCTGT
CTCCCCGGCCAGCCAGCCTCCAGGGGAGGGGGCAGCAGGTGCCAGGCGGGGTCCAGGGTC
TGCTGGCCGTGTGTGCCCTGGTTTATGGAATCGCCTGTTCTCAAGGAAACTGACCACGCA
AGGCTAATTACTGCTTTTCTTGGCGTTGAGTAGAAGCAGGACATCTGTGTGTATGTGTGT
ATTTAAGTTAAATTATTTATAATAACCAGAACCAGCGCTTGCTGGCCAGGAGCCTTGCTG
AGCAGGTGTCTTTCCTGCCCCCTAGTGGGGACAGAGAGACACCTTCATGTCATCAAGATG
GAGCCTCTTCGAAAGGCTTCCTGGCCTTTTTAGAGTTTGTGGGATATTTTAAAGTCACCC
TCCTGTCCCTTAAAGTTTCATTACGTGGAGCGTATTCCAGCACCTTCCGACATTACTGCC
ACAGCGGAGGAAGTGCGGGCACCACTGGGATCGTGGCTTATTACCTGGGAATGTGTCAGC
CCTGCTGGGGCCTCCCCCCGCCCCGCTGGGGACGACCGTCAGACCATCCAGGATCGGGTG
ACCGCCCCGCGAAGTGAGGGGGTGCAGTTGGCCATCTTCTCCCCCCGACCAGGCAGGCTC
CCCCGTAACACTTGCCCAGGAGCCCGCCCGCAGGGCCCGTGTCCCTTCTGCTTGCAACTG
TGGCCGAGTGTCCCCGTCCCCTCTGTTGTGTAGAACATGGATGATTGTCTAGTGACCCCC
TACTCACTGTAACCATGACTCCTGGCCGTAGATGTAGTGTTTCTGATGATGTATTTTCAA
TAAATGCCTCCGGGGCCCTGCTTTTACCGGTGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCACAGGAGTCAGGCCCAGGCCCCACCGTCCTCACATTCCTGGGGTCATGAGACGCT
GCCCAGCCCCACTCCCAAGTGGGTAGGGAGCAGCCATGGCCCCGTAGGTATCCGGGTGTG
GTGGCCCCTCTGGGACAGGGGCTACCCCAACAAGGCCCCCGCCTGGCTGGGCGCAGCTTG
CTCTGGGTGAGGGGAGGCAGAAAAGCACTGACACGGTAGAGGAGGGGGTGCCCGGCCTGT
CTCCCCGGCCAGCCAGCCTCCAGGGGAGGGGGCAGCAGGTGCCAGGCGGGGTCCAGGGTC
TGCTGGCCGTGTGTGCCCTGGTTTATGGAATCGCCTGTTCTCAAGGAAACTGACCACGCA
AGGCTAATTACTGCTTTTCTTGGCGTTGAGTAGAAGCAGGACATCTGTGTGTATGTGTGT
ATTTAAGTTAAATTATTTATAATAACCAGAACCAGCGCTTGCTGGCCAGGAGCCTTGCTG
AGCAGGTGTCTTTCCTGCCCCCTAGTGGGGACAGAGAGACACCTTCATGTCATCAAGATG
GAGCCTCTTCGAAAGGCTTCCTGGCCTTTTTAGAGTTTGTGGGATATTTTAAAGTCACCC
TCCTGTCCCTTAAAGTTTCATTACGTGGAGCGTATTCCAGCACCTTCCGACATTACTGCC
ACAGCGGAGGAAGTGCGGGCACCACTGGGATCGTGGCTTATTACCTGGGAATGTGTCAGC
CCTGCTGGGGCCTCCCCCCGCCCCGCTGGGGACGACCGTCAGACCATCCAGGATCGGGTG
ACCGCCCCGCGAAGTGAGGGGGTGCAGTTGGCCATCTTCTCCCCCCGACCAGGCAGGCTC
CCCCGTAACACTTGCCCAGGAGCCCGCCCGCAGGGCCCGTGTCCCTTCTGCTTGCAACTG
TGGCCGAGTGTCCCCGTCCCCTCTGTTGTGTAGAACATGGATGATTGTCTAGTGACCCCC
TACTCACTGTAACCATGACTCCTGGCCGTAGATGTAGTGTTTCTGATGATGTATTTTCAA
TAAATGCCTCCGGGGCCCTGCTTTTACCGGTGGGCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               432-579, - strand, RNAz p=0.850657
               

               
               698-788, - strand, RNAz p=0.640866

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               432-579, - strand, RNAz p=0.850657
               

               
               698-788, - strand, RNAz p=0.640866

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               166-1056, gnl|bosTau2|chr16 (30780523-30781399)
               

               
               166-1056, gnl|Hg17|chr1 (9598188-9599283)
               

               
               166-1056, gnl|Mm7|chr4 (148715327-148714412)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               166-1056, gnl|bosTau2|chr16 (30780523-30781399)
               

               
               166-1056, gnl|Hg17|chr1 (9598188-9599283)
               

               
               166-1056, gnl|Mm7|chr4 (148715327-148714412)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               mas (0.210305)
               

               
               eye (0.170503)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               eye (0.170503)

	432-579, - strand, RNAz p=0.850657
	698-788, - strand, RNAz p=0.640866

	166-1056, gnl\|bosTau2\|chr16 (30780523-30781399)
	166-1056, gnl\|Hg17\|chr1 (9598188-9599283)
	166-1056, gnl\|Mm7\|chr4 (148715327-148714412)