Non-Coding RNA Search

Ss1.1-Mixc-0029,k06.3

Sequence:


               
               CAAGGGCAAGGACATGGAGGAGGGCAAAGCCGCCTTCTCGAAAGATGAGTCCAAGGAGCC
CATCGTGGAGGTGCGAACAGAGGAGGAGCGGACCCCAAACCACGACGGAGGGAAGCACAC
GGAGCCCAACGAGACAACGCCGCTGACGGAGCCCGAGAAGGGCCCTGTAGAAGCAAAGCC
GGAGTGCCAGGAGACAGAAACGAAGCCAGCGCCAGCCGACGTCGAGACGGTCCCCAATGA
TGCCCCACAGACAAAGGAGAACGAGAGCAAAGCGTGATGGGTGACGAGACACCAGCAAAG
ATCAAAATAACAAGTGACACAACAGCTTCACCAGAGCATCTCCAGTCACATACACACACA
CACACACACACACACACACACACGCATTTCATTCCTCTAGTGTCTTTTGCCTTTAAAAAA
GAAAAAACTAAACAGATCAACACGGGAGCTCCTTTTTGTAGGTTTATAGAAAGGGTTCCT
CTGTTGTACAGTCACTTGTAAGAAAATGAGACAAAAAGATGAAACCCACAGCCAAACTAG
GACACTCCGTTCCCTGAAACCATTTAAAAATCAAACAAAAGGACCCCAAATTAAGAATCT
AGGAAGCTCAGAAAAAGAAAAAAAAAATCTAGGTTCAGGAAGACCACACTTGGTGGTGCC
TGGTTGGCACAGACCAGGTTCCGAAAAATACTTCCAGGCACTAAGACTAACCGAATGAAC
AAAGTCCAAGTTTATTTTTATACTTTCAGTCGAGTTTGAACTCTGTAAAACCTCATAAAT
AAGTTATAATTTCTGTTCACTTTGTATTTGTTCAGTATGCAAAGTGTGTCACCTTTCTAG
CTGAATTCAATTCCCACATAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGGCAAGGACATGGAGGAGGGCAAAGCCGCCTTCTCGAAAGATGAGTCCAAGGAGCC
CATCGTGGAGGTGCGAACAGAGGAGGAGCGGACCCCAAACCACGACGGAGGGAAGCACAC
GGAGCCCAACGAGACAACGCCGCTGACGGAGCCCGAGAAGGGCCCTGTAGAAGCAAAGCC
GGAGTGCCAGGAGACAGAAACGAAGCCAGCGCCAGCCGACGTCGAGACGGTCCCCAATGA
TGCCCCACAGACAAAGGAGAACGAGAGCAAAGCGTGATGGGTGACGAGACACCAGCAAAG
ATCAAAATAACAAGTGACACAACAGCTTCACCAGAGCATCTCCAGTCACATACACACACA
CACACACACACACACACACACACGCATTTCATTCCTCTAGTGTCTTTTGCCTTTAAAAAA
GAAAAAACTAAACAGATCAACACGGGAGCTCCTTTTTGTAGGTTTATAGAAAGGGTTCCT
CTGTTGTACAGTCACTTGTAAGAAAATGAGACAAAAAGATGAAACCCACAGCCAAACTAG
GACACTCCGTTCCCTGAAACCATTTAAAAATCAAACAAAAGGACCCCAAATTAAGAATCT
AGGAAGCTCAGAAAAAGAAAAAAAAAATCTAGGTTCAGGAAGACCACACTTGGTGGTGCC
TGGTTGGCACAGACCAGGTTCCGAAAAATACTTCCAGGCACTAAGACTAACCGAATGAAC
AAAGTCCAAGTTTATTTTTATACTTTCAGTCGAGTTTGAACTCTGTAAAACCTCATAAAT
AAGTTATAATTTCTGTTCACTTTGTATTTGTTCAGTATGCAAAGTGTGTCACCTTTCTAG
CTGAATTCAATTCCCACATAGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|817987|emb|CAA33150.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|817987|emb|CAA33150.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               612-722, - strand, RNAz p=0.606797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               612-722, - strand, RNAz p=0.606797

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               157-864, gnl|bosTau2|chr15 (10218622-10219332)
               

               
               157-864, gnl|Hg17|chr11 (112651199-112651911)
               

               
               157-864, gnl|Mm7|chr9 (49480804-49479990)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               157-864, gnl|bosTau2|chr15 (10218622-10219332)
               

               
               157-864, gnl|Hg17|chr11 (112651199-112651911)
               

               
               157-864, gnl|Mm7|chr9 (49480804-49479990)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ebs (0.236602)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               che (0.136314)

	157-864, gnl\|bosTau2\|chr15 (10218622-10219332)
	157-864, gnl\|Hg17\|chr11 (112651199-112651911)
	157-864, gnl\|Mm7\|chr9 (49480804-49479990)