Ss1.1-Mixc-0029,k12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCTCCTTCTCTGACCCCACGTCCAAGATGCGCCACCTGGAGACCCACGACACCG ATAAGGAGCACAAGTGCCCTCACTGTGACAAGAAGTTCAACCAGGTGGGGAACCTGAAGG CCCATCTGAAGATCCACATCGCCGACGGGCCCCTCAAGTGCCGGGAGTGTGGGAAGCAGT TCACCACATCAGGGAACCTGAAGCGGCACCTTCGGATTCACAGCGGGGAGAAGCCGTACG TGTGTGTCCACTGCCAGCGGCAGTTCGCGGACCCCGGCGCCCTGCAGCGGCACGTCCGCA TCCACACGGGTGAGAAACCGTGCCAGTGTGTGATGTGCGGCAAGGCCTTCACTCAGGCCA GCTCCCTCATTGCCCACGTACGCCAGCACACCGGGGAGAAGCCCTACGTCTGCGAGCGCT GCGGCAAGAGATTCGTCCAGTCCAGCCAGTTGGCCAATCACATCCGCCACCATGACAACA TCCGCCCCCATAAGTGCAGCGTGTGCAGCAAGGCCTTCGTCAACGTGGGCGATCTGTCCA AGCACATCATCATCCACACTGGAGAGAAGCCTTACCTGTGTGACAAGTGCGGTCGCGGCT TTAACCGGGTGGACAACCTGCGTTCCCACGTGAAGACCGTGCACCAGGGCAAGGCAGGCA TCAAAATCCTGGAGCCAGAGGAGGGCGGTGAGGTCAGCGTGGTCACCGTCGATGACATGG TCACGCTGGCCACAGAGGCACTCGCGGCAACGGCTGTCACTCAGCTCACAGTGGTGCCCG TGGGGGCCGCCGTGACCGCCGATGAGACAGAAGTACTTAAAGCCGAGATCAGCAAAGCTG TGAAGCAAGTGCAGGAAGAAGATCCCAACACCCACATCCTCTACGCCTGTGACTCCTGTG GGGATAAGTTCCTGGATGCCAACAGCCTGGCCCAGCACGTGCGCATCCACACCGCCCAGG CACTGGTCATGTTCCAGACGGACGCGGACTTCTACCAGCAGTACGGGCCCGGCAGCACGT GGCCGGCCGGGCAGGTGCTGCAGGCTGGGGAGCTGGTCTTCCGCCCTCGGGACGGGGCTG ATGGGCAGCCTGCCCTGGCAGAGACACCCCCCACAGCCCCTGAATGTCCACCGCCTGCTG AGTGAGCAGGCACCCCTCCTCCTGACTGTTTATTTAAGGATGGATGGCACCCTAGAACTG AGAGGGGTGGCCCCGTTCCGTAGAGAGAATAAATTTGATTATTTTCTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCTCCTTCTCTGACCCCACGTCCAAGATGCGCCACCTGGAGACCCACGACACCG ATAAGGAGCACAAGTGCCCTCACTGTGACAAGAAGTTCAACCAGGTGGGGAACCTGAAGG CCCATCTGAAGATCCACATCGCCGACGGGCCCCTCAAGTGCCGGGAGTGTGGGAAGCAGT TCACCACATCAGGGAACCTGAAGCGGCACCTTCGGATTCACAGCGGGGAGAAGCCGTACG TGTGTGTCCACTGCCAGCGGCAGTTCGCGGACCCCGGCGCCCTGCAGCGGCACGTCCGCA TCCACACGGGTGAGAAACCGTGCCAGTGTGTGATGTGCGGCAAGGCCTTCACTCAGGCCA GCTCCCTCATTGCCCACGTACGCCAGCACACCGGGGAGAAGCCCTACGTCTGCGAGCGCT GCGGCAAGAGATTCGTCCAGTCCAGCCAGTTGGCCAATCACATCCGCCACCATGACAACA TCCGCCCCCATAAGTGCAGCGTGTGCAGCAAGGCCTTCGTCAACGTGGGCGATCTGTCCA AGCACATCATCATCCACACTGGAGAGAAGCCTTACCTGTGTGACAAGTGCGGTCGCGGCT TTAACCGGGTGGACAACCTGCGTTCCCACGTGAAGACCGTGCACCAGGGCAAGGCAGGCA TCAAAATCCTGGAGCCAGAGGAGGGCGGTGAGGTCAGCGTGGTCACCGTCGATGACATGG TCACGCTGGCCACAGAGGCACTCGCGGCAACGGCTGTCACTCAGCTCACAGTGGTGCCCG TGGGGGCCGCCGTGACCGCCGATGAGACAGAAGTACTTAAAGCCGAGATCAGCAAAGCTG TGAAGCAAGTGCAGGAAGAAGATCCCAACACCCACATCCTCTACGCCTGTGACTCCTGTG GGGATAAGTTCCTGGATGCCAACAGCCTGGCCCAGCACGTGCGCATCCACACCGCCCAGG CACTGGTCATGTTCCAGACGGACGCGGACTTCTACCAGCAGTACGGGCCCGGCAGCACGT GGCCGGCCGGGCAGGTGCTGCAGGCTGGGGAGCTGGTCTTCCGCCCTCGGGACGGGGCTG ATGGGCAGCCTGCCCTGGCAGAGACACCCCCCACAGCCCCTGAATGTCCACCGCCTGCTG AGTGAGCAGGCACCCCTCCTCCTGACTGTTTATTTAAGGATGGATGGCACCCTAGAACTG AGAGGGGTGGCCCCGTTCCGTAGAGAGAATAAATTTGATTATTTTCTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 511-629, - strand, RNAz p=0.845864 | |
| 1099-1214, - strand, RNAz p=0.999577 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 511-629, - strand, RNAz p=0.845864 | |
| 1099-1214, - strand, RNAz p=0.999577 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr16 (36865214-36865105) | |
| 1-110, gnl|canFam2|chr2 (84576217-84575901) | |
| 1-110, gnl|danRer3|chrNA (198199959-198200275) | |
| 1-110, gnl|dasNov1|scaffold_5346 (10482-10165) | |
| 1-110, gnl|echTel1|scaffold_174747 (5173-4868) | |
| 1-110, gnl|fr1|chrUn (105030069-105029751) | |
| 1-110, gnl|galGal2|chr21 (4154233-4154551) | |
| 1-110, gnl|hg17|chr1 (16016099-16016416) | |
| 1-110, gnl|Hg17|chr1 (16016204-16016095) | |
| 1-110, gnl|loxAfr1|scaffold_113 (14882-14566) | |
| 1-110, gnl|mm7|chr4 (140843534-140843218) | |
| 1-110, gnl|Mm7|chr4 (140843427-140843533) | |
| 1-110, gnl|monDom2|scaffold_109 (3264729-3264412) | |
| 1-110, gnl|oryCun1|scaffold_100775 (3005-3323) | |
| 1-110, gnl|panTro1|chr1 (16181995-16182312) | |
| 1-110, gnl|rheMac2|chr1 (18746357-18746674) | |
| 1-110, gnl|rn3|chr5 (160367085-160366769) | |
| 1-110, gnl|tetNig1|chrUn_random (28369427-28369745) | |
| 1-110, gnl|xenTro1|scaffold_68 (84159-84476) | |
| 112-659, gnl|bosTau2|chr25 (33530281-33530825) | |
| 112-659, gnl|Hg17|chr7 (6466749-6467293) | |
| 122-638, gnl|bosTau2|chr14 (3061341-3060825) | |
| 122-638, gnl|Hg17|chr8 (146078403-146077887) | |
| 860-1248, gnl|bosTau2|chr16 (36862785-36862405) | |
| 860-1248, gnl|Hg17|chr1 (16014055-16013671) | |
| 860-1248, gnl|Mm7|chr4 (140845282-140845665) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr16 (36865214-36865105) | |
| 1-110, gnl|canFam2|chr2 (84576217-84575901) | |
| 1-110, gnl|danRer3|chrNA (198199959-198200275) | |
| 1-110, gnl|dasNov1|scaffold_5346 (10482-10165) | |
| 1-110, gnl|echTel1|scaffold_174747 (5173-4868) | |
| 1-110, gnl|fr1|chrUn (105030069-105029751) | |
| 1-110, gnl|galGal2|chr21 (4154233-4154551) | |
| 1-110, gnl|hg17|chr1 (16016099-16016416) | |
| 1-110, gnl|Hg17|chr1 (16016204-16016095) | |
| 1-110, gnl|loxAfr1|scaffold_113 (14882-14566) | |
| 1-110, gnl|mm7|chr4 (140843534-140843218) | |
| 1-110, gnl|Mm7|chr4 (140843427-140843533) | |
| 1-110, gnl|monDom2|scaffold_109 (3264729-3264412) | |
| 1-110, gnl|oryCun1|scaffold_100775 (3005-3323) | |
| 1-110, gnl|panTro1|chr1 (16181995-16182312) | |
| 1-110, gnl|rheMac2|chr1 (18746357-18746674) | |
| 1-110, gnl|rn3|chr5 (160367085-160366769) | |
| 1-110, gnl|tetNig1|chrUn_random (28369427-28369745) | |
| 1-110, gnl|xenTro1|scaffold_68 (84159-84476) | |
| 112-659, gnl|bosTau2|chr25 (33530281-33530825) | |
| 112-659, gnl|Hg17|chr7 (6466749-6467293) | |
| 122-638, gnl|bosTau2|chr14 (3061341-3060825) | |
| 122-638, gnl|Hg17|chr8 (146078403-146077887) | |
| 860-1248, gnl|bosTau2|chr16 (36862785-36862405) | |
| 860-1248, gnl|Hg17|chr1 (16014055-16013671) | |
| 860-1248, gnl|Mm7|chr4 (140845282-140845665) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.169578) | |
| pla (0.133672) | |
| ute (0.132784) |