Ss1.1-Mixc-0029,l09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATGTTTTCAGCTTAATATTTTACATCAGTCACTGGAGGAGTTTTCTCCAGGTGCTTTC TATATTACCATCCCTTGTTAATATGATCTCTTTTTAGAATTTTAGGTTATTTAAGTAGTT TTTACAGAAGTAGCCCAAGAAGCCATGAGTTTCAGAGTTAAATGATCCCCTGCTTCCCTT TGTTCCTCCCTTCCTGCGGCATTAATGCTGATTGTGCCAATTGGTGTGTAGAAAAGAAAG ATGGCATTGGGGGAAATTTTAGACATCTTAAGGTTTGAAACTCTTCTTATTCTCCTCTTG TCCCAAATGGTTTAATTTTAGCATAAGTAATATGCCTTCACACTGGATTGTAAGAGGCAT GTGATTTTATTTTTGTGATGTATTGTCTTCTGCAGTATTAAAGGGAAAGAAGTGTTAATG TGTATCATCCTATCTTGTTTTTGAAGCCAGGGTAGTTGTATAATTTTGTTACCAGCAGTG CTAACCTGAATGTGATCTGATTACCTTGGAAATGCAGGAACTTATATGAATGTACTGTAA AATAAAATGCGGACTGATTCCCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATGTTTTCAGCTTAATATTTTACATCAGTCACTGGAGGAGTTTTCTCCAGGTGCTTTC TATATTACCATCCCTTGTTAATATGATCTCTTTTTAGAATTTTAGGTTATTTAAGTAGTT TTTACAGAAGTAGCCCAAGAAGCCATGAGTTTCAGAGTTAAATGATCCCCTGCTTCCCTT TGTTCCTCCCTTCCTGCGGCATTAATGCTGATTGTGCCAATTGGTGTGTAGAAAAGAAAG ATGGCATTGGGGGAAATTTTAGACATCTTAAGGTTTGAAACTCTTCTTATTCTCCTCTTG TCCCAAATGGTTTAATTTTAGCATAAGTAATATGCCTTCACACTGGATTGTAAGAGGCAT GTGATTTTATTTTTGTGATGTATTGTCTTCTGCAGTATTAAAGGGAAAGAAGTGTTAATG TGTATCATCCTATCTTGTTTTTGAAGCCAGGGTAGTTGTATAATTTTGTTACCAGCAGTG CTAACCTGAATGTGATCTGATTACCTTGGAAATGCAGGAACTTATATGAATGTACTGTAA AATAAAATGCGGACTGATTCCCAG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-120, + strand, RNAz p=0.658167 | |
| 145-264, - strand, RNAz p=0.580368 | |
| 305-416, - strand, RNAz p=0.584705 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-120, + strand, RNAz p=0.658167 | |
| 145-264, - strand, RNAz p=0.580368 | |
| 305-416, - strand, RNAz p=0.584705 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-564, gnl|bosTau2|chr5 (48525514-48524967) | |
| 1-564, gnl|canFam2|chr27 (20650757-20651105) | |
| 1-564, gnl|canFam2|chr27 (20651106-20650600) | |
| 1-564, gnl|dasNov1|scaffold_69022 (1047-1404) | |
| 1-564, gnl|dasNov1|scaffold_69022 (1405-896) | |
| 1-564, gnl|echTel1|scaffold_305863 (3913-3553) | |
| 1-564, gnl|echTel1|scaffold_305863 (3552-4034) | |
| 1-564, gnl|galGal2|chr1 (56324095-56323590) | |
| 1-564, gnl|hg17|chr12 (15102969-15103320) | |
| 1-564, gnl|hg17|chr12 (30673223-30673727) | |
| 1-564, gnl|Hg17|chr12 (30673759-30673191) | |
| 1-564, gnl|loxAfr1|scaffold_18367 (40893-40534) | |
| 1-564, gnl|loxAfr1|scaffold_18367 (40534-41050) | |
| 1-564, gnl|mm7|chr6 (148849390-148849043) | |
| 1-564, gnl|mm7|chr6 (148849042-148849538) | |
| 1-564, gnl|Mm7|chr6 (148849555-148849010) | |
| 1-564, gnl|monDom2|scaffold_130 (178909-179284) | |
| 1-564, gnl|oryCun1|scaffold_158310 (3707-4036) | |
| 1-564, gnl|oryCun1|scaffold_158310 (4037-3623) | |
| 1-564, gnl|panTro1|chrUn_random (41375006-41375357) | |
| 1-564, gnl|panTro1|chrUn_random (57140131-57140639) | |
| 1-564, gnl|rheMac2|chr11 (15446733-15447087) | |
| 1-564, gnl|rheMac2|chr11 (30932623-30933126) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-564, gnl|bosTau2|chr5 (48525514-48524967) | |
| 1-564, gnl|canFam2|chr27 (20650757-20651105) | |
| 1-564, gnl|canFam2|chr27 (20651106-20650600) | |
| 1-564, gnl|dasNov1|scaffold_69022 (1047-1404) | |
| 1-564, gnl|dasNov1|scaffold_69022 (1405-896) | |
| 1-564, gnl|echTel1|scaffold_305863 (3913-3553) | |
| 1-564, gnl|echTel1|scaffold_305863 (3552-4034) | |
| 1-564, gnl|galGal2|chr1 (56324095-56323590) | |
| 1-564, gnl|hg17|chr12 (15102969-15103320) | |
| 1-564, gnl|hg17|chr12 (30673223-30673727) | |
| 1-564, gnl|Hg17|chr12 (30673759-30673191) | |
| 1-564, gnl|loxAfr1|scaffold_18367 (40893-40534) | |
| 1-564, gnl|loxAfr1|scaffold_18367 (40534-41050) | |
| 1-564, gnl|mm7|chr6 (148849390-148849043) | |
| 1-564, gnl|mm7|chr6 (148849042-148849538) | |
| 1-564, gnl|Mm7|chr6 (148849555-148849010) | |
| 1-564, gnl|monDom2|scaffold_130 (178909-179284) | |
| 1-564, gnl|oryCun1|scaffold_158310 (3707-4036) | |
| 1-564, gnl|oryCun1|scaffold_158310 (4037-3623) | |
| 1-564, gnl|panTro1|chrUn_random (41375006-41375357) | |
| 1-564, gnl|panTro1|chrUn_random (57140131-57140639) | |
| 1-564, gnl|rheMac2|chr11 (15446733-15447087) | |
| 1-564, gnl|rheMac2|chr11 (30932623-30933126) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| fcc (0.197785) | |
| nmm (0.132802) |