Non-Coding RNA Search

Ss1.1-Mixc-0029b12.3

Sequence:


               
               TCTTTGCTAAACGGTGTTGTGTTCCACAATGCCTGAGCCAGCAAAATCTGCTCCCGCGCC
CAAGAAGGGCTCGAAGAAAGCCGTCACCAAAGCCCAGAAGAAGGACGGCAAGAAGCGGAA
GCGCAGCCGCAAGGAGAGCTATTCCATCTACGTGTACAAGGTGCTGAAGCAGGTGCACCC
GGACACGGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTT
CGAGCGCATCGCGGGCGAAGCGTCCCGCCTGGCTCATTACAACAAGCGCTCGACCATCAC
GTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGC
CGTATCCGAGGGCACCAAGGCAGTCACCAAGTACACCAGCTCCAAGTGAGTCCCTGCCGG
GACGTGGCGCTCGCTCGAGTCGCCGTGCCGCTTGACTCCAAAAGGCTCTTTTCAGAGCCA
CCCACCTAGTCACCAGAAAAGAGCTTTGTTCACTTGTTTTCCCTCTTAGTTCCTTCTCAC
AAAGTAAGTTCTAGTTGGTTAAAAAGGTCTTGTAAGAAGGCATTCGTACCTTTTTAAGCT
CTTCCGACTTGAGGTTTCTGGTGCGTGATTGGCTTTGCTTTTGAATGTAGGGCGCGTCTT
AACTCCCTTTCTGGGCTGCTTAGCTTTACTATGAGTCAGTTCTAAATTAGGATATTGAGA
CTGCTCCTCCCAATCGTCTGATCCTAGACTGTTGTATCCTGGTGGCTCTGTTGGATACGT
CTCGTTGGTGTTCCAAAACTGATTTCGGGCTATTCTCATTTAAGAAAGGACCCCAGAACA
TAACTAAGCCCAGGTCCTGCGAACACTGCGTCACAGCCCTGAAGAATTGTCCAGAGAAAC
TGGCAGCTGCTTGAGTGCCCGGTCGCCAGTTATGCCCTGAGATGTAGCCTCCTGTGGATA
CCCGCTGCTAGGGTACTTCTTGCGGAGCCCGCGCTGCCTGGTCTCAGCCTTTTCCTGATT
GGACGACATGAATATTCAAAATCTCCCGCCGGCGCTCACTTGGGCCCTTTGAAATCCCTA
TTTCTGTTTGTGGATCATTTTTGCATTCAGTTCTCTCTTCTTGGAACGCTCCGGCCTCGG
GTCACTGCAAGGCGCTGGTCGTTTTAGTCTGGGCTCAAAAGTCACCTCTTGGAGACCTTC
CCAAGTCATCCACTCAGGAATTTGCGTCTCTTGTTCCTGCCTGTACTGGTCCCTCACTGT
TTTATCTTCCTCCTAGCAGCTGTCAGAAATTGTATTTTTTTATTTACGGTCTGTCTTCTC
AAGCCCTTAACAGAAACTTTGCTGGTCTGGTTTTCCTCTATATGGTCAATGCCAACCAGT
GCTTGGTGAACACTTAAAACCTTAATATTGTATCACTTTTTCTGTCTCACCTCTGTAATT
GCTTCCATAGGTGGATGAGTATGGTTAGATGTCTGTGAAGACATGATGAAGATGGGAATG
TTTTTGGAGCTCCTTCCCAAAGTCTGTCTGGTCACCTCAGAGCAACAGCTGGGAGGAAGC
CTGTGTTAAAATTTGTGTGTGTGTGTGCGCAACGGGGAGTGGCAATTTTAAATCAATTTT
GCTTCTCAGTTTGGCCTAATTGCTTGAATTTTCATTAAATTCAGAGCATTGGCCACTGGA
AAGATCCTTTTCCTTTTTCTTTATGGCACTTTTCCTTCCATCCTGACCCTTTGTTCCCCA
CTGAGATGGCTTTTAATTTACACTCACCGTCTCATTTGCTTTTTAGGAGACCCCATAAAA
TAGACAAGGTTAATATCCCTTTAAAAATGGGGTTGAGAGGAGCAAAGTGGACCACTGGTC
ATGCAGCTAACATTTTCCTCTTTTGTATCCTCAGATTCGAGGACAATTGCATTTTAGTTT
TATTTCCTGTAATTACAGAATGCTCAGTCTCTCAGTCCACGCATTGATTTTGTTGATACA
GACACTGATGATCTGATCGGTTATTCAGCTCTGCTTTTGAATAAGGGGTCCTGGAGGTGA
TTGCAGGGGTTTCATGAATTCAAACGGACTCCAGACATTATCAGAGACTGAATAGATCTT
ATGCTTCCTGGATGTGTCTTTTCAGATGTGTGTAGATGCTGTTGTTATTAATAAAGTTAC
CAATTAATTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTTGCTAAACGGTGTTGTGTTCCACAATGCCTGAGCCAGCAAAATCTGCTCCCGCGCC
CAAGAAGGGCTCGAAGAAAGCCGTCACCAAAGCCCAGAAGAAGGACGGCAAGAAGCGGAA
GCGCAGCCGCAAGGAGAGCTATTCCATCTACGTGTACAAGGTGCTGAAGCAGGTGCACCC
GGACACGGGCATCTCGTCCAAGGCCATGGGCATCATGAACTCCTTCGTCAACGACATCTT
CGAGCGCATCGCGGGCGAAGCGTCCCGCCTGGCTCATTACAACAAGCGCTCGACCATCAC
GTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGCTGCCCGGCGAGCTGGCCAAGCACGC
CGTATCCGAGGGCACCAAGGCAGTCACCAAGTACACCAGCTCCAAGTGAGTCCCTGCCGG
GACGTGGCGCTCGCTCGAGTCGCCGTGCCGCTTGACTCCAAAAGGCTCTTTTCAGAGCCA
CCCACCTAGTCACCAGAAAAGAGCTTTGTTCACTTGTTTTCCCTCTTAGTTCCTTCTCAC
AAAGTAAGTTCTAGTTGGTTAAAAAGGTCTTGTAAGAAGGCATTCGTACCTTTTTAAGCT
CTTCCGACTTGAGGTTTCTGGTGCGTGATTGGCTTTGCTTTTGAATGTAGGGCGCGTCTT
AACTCCCTTTCTGGGCTGCTTAGCTTTACTATGAGTCAGTTCTAAATTAGGATATTGAGA
CTGCTCCTCCCAATCGTCTGATCCTAGACTGTTGTATCCTGGTGGCTCTGTTGGATACGT
CTCGTTGGTGTTCCAAAACTGATTTCGGGCTATTCTCATTTAAGAAAGGACCCCAGAACA
TAACTAAGCCCAGGTCCTGCGAACACTGCGTCACAGCCCTGAAGAATTGTCCAGAGAAAC
TGGCAGCTGCTTGAGTGCCCGGTCGCCAGTTATGCCCTGAGATGTAGCCTCCTGTGGATA
CCCGCTGCTAGGGTACTTCTTGCGGAGCCCGCGCTGCCTGGTCTCAGCCTTTTCCTGATT
GGACGACATGAATATTCAAAATCTCCCGCCGGCGCTCACTTGGGCCCTTTGAAATCCCTA
TTTCTGTTTGTGGATCATTTTTGCATTCAGTTCTCTCTTCTTGGAACGCTCCGGCCTCGG
GTCACTGCAAGGCGCTGGTCGTTTTAGTCTGGGCTCAAAAGTCACCTCTTGGAGACCTTC
CCAAGTCATCCACTCAGGAATTTGCGTCTCTTGTTCCTGCCTGTACTGGTCCCTCACTGT
TTTATCTTCCTCCTAGCAGCTGTCAGAAATTGTATTTTTTTATTTACGGTCTGTCTTCTC
AAGCCCTTAACAGAAACTTTGCTGGTCTGGTTTTCCTCTATATGGTCAATGCCAACCAGT
GCTTGGTGAACACTTAAAACCTTAATATTGTATCACTTTTTCTGTCTCACCTCTGTAATT
GCTTCCATAGGTGGATGAGTATGGTTAGATGTCTGTGAAGACATGATGAAGATGGGAATG
TTTTTGGAGCTCCTTCCCAAAGTCTGTCTGGTCACCTCAGAGCAACAGCTGGGAGGAAGC
CTGTGTTAAAATTTGTGTGTGTGTGTGCGCAACGGGGAGTGGCAATTTTAAATCAATTTT
GCTTCTCAGTTTGGCCTAATTGCTTGAATTTTCATTAAATTCAGAGCATTGGCCACTGGA
AAGATCCTTTTCCTTTTTCTTTATGGCACTTTTCCTTCCATCCTGACCCTTTGTTCCCCA
CTGAGATGGCTTTTAATTTACACTCACCGTCTCATTTGCTTTTTAGGAGACCCCATAAAA
TAGACAAGGTTAATATCCCTTTAAAAATGGGGTTGAGAGGAGCAAAGTGGACCACTGGTC
ATGCAGCTAACATTTTCCTCTTTTGTATCCTCAGATTCGAGGACAATTGCATTTTAGTTT
TATTTCCTGTAATTACAGAATGCTCAGTCTCTCAGTCCACGCATTGATTTTGTTGATACA
GACACTGATGATCTGATCGGTTATTCAGCTCTGCTTTTGAATAAGGGGTCCTGGAGGTGA
TTGCAGGGGTTTCATGAATTCAAACGGACTCCAGACATTATCAGAGACTGAATAGATCTT
ATGCTTCCTGGATGTGTCTTTTCAGATGTGTGTAGATGCTGTTGTTATTAATAAAGTTAC
CAATTAATTTAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5QNX0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5QNX0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               78-197, + strand, RNAz p=0.547655

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               78-197, + strand, RNAz p=0.547655

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               459-484, , RaveNnA Score=39.25

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               459-484, , RaveNnA Score=39.25

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-1186, gnl|bosTau2|chr13 (27850696-27849508)
               


               
               13-407, gnl|bosTau2|chr10 (15825839-15825443)
               

               
               13-407, gnl|Hg17|chr6 (27883686-27883285)
               

               
               13-407, gnl|Mm7|chr13 (21120091-21120490)
               


               
               1797-2174, gnl|bosTau2|chr3 (17593823-17594198)
               

               
               1797-2174, gnl|Hg17|chr1 (146669437-146669081)
               

               
               1797-2174, gnl|Mm7|chr3 (96097370-96097691)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1186, gnl|bosTau2|chr13 (27850696-27849508)
               


               
               13-407, gnl|bosTau2|chr10 (15825839-15825443)
               

               
               13-407, gnl|Hg17|chr6 (27883686-27883285)
               

               
               13-407, gnl|Mm7|chr13 (21120091-21120490)
               


               
               1797-2174, gnl|bosTau2|chr3 (17593823-17594198)
               

               
               1797-2174, gnl|Hg17|chr1 (146669437-146669081)
               

               
               1797-2174, gnl|Mm7|chr3 (96097370-96097691)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               ssp (1.3552)
               

               
               cbl (0.918379)
               

               
               ldo (0.582016)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               pla (0.401016)
               

               
               cov (0.396458)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (1.3552)
               

               
               cbl (0.918379)
               

               
               ldo (0.582016)
               

               
               ste (0.540833)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               pla (0.401016)
               

               
               cov (0.396458)
               

               
               duo (0.345602)
               

               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               bla (0.248694)
               

               
               eru (0.240096)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               med (0.232504)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               sug (0.127291)
               

               
               ecc (0.115035)

	1-1186, gnl\|bosTau2\|chr13 (27850696-27849508)

	13-407, gnl\|bosTau2\|chr10 (15825839-15825443)
	13-407, gnl\|Hg17\|chr6 (27883686-27883285)
	13-407, gnl\|Mm7\|chr13 (21120091-21120490)

	1797-2174, gnl\|bosTau2\|chr3 (17593823-17594198)
	1797-2174, gnl\|Hg17\|chr1 (146669437-146669081)
	1797-2174, gnl\|Mm7\|chr3 (96097370-96097691)

	ssp (1.3552)
	cbl (0.918379)
	ldo (0.582016)
	ste (0.540833)
	tbr (0.462535)
	ski (0.440205)
	pla (0.401016)
	cov (0.396458)
	duo (0.345602)
	vin (0.332557)
	sme (0.305437)
	ret (0.257467)
	thg (0.253582)
	bla (0.248694)
	eru (0.240096)
	cbe (0.239234)
	pgl (0.236967)
	med (0.232504)
	hea (0.204499)
	fcc (0.197785)
	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	cli (0.152812)
	lun (0.150489)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	lnt (0.142308)
	sug (0.127291)
	ecc (0.115035)