Non-Coding RNA Search

Ss1.1-Mixc-0029d12.5

Sequence:


               
               CAAAACACGAAGCTGACCATGAAGCGGGACGGCATCAGGTCAGTGAGGTACCAGGTCTTG
GAGGTGTCTCGGCAGCCGCTCTTCACCAATATCACAGTGGACATTGGGCGGCCCCCCTCA
TGGCCCCCTCGGGGCTGACACCAGTGGACAAAGGCTCCCAGTGCCAAGGATTGCCTGCCA
GAGGACTGACCTACAGCCTGGCTGGCGGCTGCTCTGTGGCGGATCCCCCAGGACTGAGAC
TGCGGGCTCTGTTTTCTGAGGGTCTTCAATAGGCCCCCCCAGCTACACCTGGAAATTTCA
GGACCTACTCTGGGGGGCTTCCATCCTGGGCAGGCCCCTCAAGTGTGGCCCTCCCTGGGG
TCACCCCTTCTTCCTGCTCCTCCTTCCCCAGGCCAGCCCCCTTCACTGTCAGGGCTGGGC
CAGCCCCTGCACTGCCTCACCGAGTGGCCTGGGCCAGGTCACTCCACCTCTCTGTGCCTC
AGTTTCCCCCCTCCTTGAGTCCCCTAGGGCCTGGAAGAGCGGGAGGTATGACTAGGGGGC
AGTGTCGCTTCCAGGGGGACTTCTCAGACCTGGGGATCCCCCATGCTTCCAGGGGAGGGG
AAACCTTTTACATTCAACATTGTGGGGGGCAAACGCTGGTGCGCCCCCTGCTGAGGAGCA
GCCCCGGGAGGGGACCAGAGAGGGTGCTGTGTGGCTGCCTGGGACCTTGGGGATGGGCTT
TGCATGGGGGGTGGGTGGGGCTTGGATCAGGTGGGTTCCTGCCCCCCGCCCCTCAGAAAG
AAGGCAGTAGCCCCAGGGCCGGCTCGTGTTTGTACATTGCACAGAAACTTGTGTGGGTGC
TTTAGTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAACACGAAGCTGACCATGAAGCGGGACGGCATCAGGTCAGTGAGGTACCAGGTCTTG
GAGGTGTCTCGGCAGCCGCTCTTCACCAATATCACAGTGGACATTGGGCGGCCCCCCTCA
TGGCCCCCTCGGGGCTGACACCAGTGGACAAAGGCTCCCAGTGCCAAGGATTGCCTGCCA
GAGGACTGACCTACAGCCTGGCTGGCGGCTGCTCTGTGGCGGATCCCCCAGGACTGAGAC
TGCGGGCTCTGTTTTCTGAGGGTCTTCAATAGGCCCCCCCAGCTACACCTGGAAATTTCA
GGACCTACTCTGGGGGGCTTCCATCCTGGGCAGGCCCCTCAAGTGTGGCCCTCCCTGGGG
TCACCCCTTCTTCCTGCTCCTCCTTCCCCAGGCCAGCCCCCTTCACTGTCAGGGCTGGGC
CAGCCCCTGCACTGCCTCACCGAGTGGCCTGGGCCAGGTCACTCCACCTCTCTGTGCCTC
AGTTTCCCCCCTCCTTGAGTCCCCTAGGGCCTGGAAGAGCGGGAGGTATGACTAGGGGGC
AGTGTCGCTTCCAGGGGGACTTCTCAGACCTGGGGATCCCCCATGCTTCCAGGGGAGGGG
AAACCTTTTACATTCAACATTGTGGGGGGCAAACGCTGGTGCGCCCCCTGCTGAGGAGCA
GCCCCGGGAGGGGACCAGAGAGGGTGCTGTGTGGCTGCCTGGGACCTTGGGGATGGGCTT
TGCATGGGGGGTGGGTGGGGCTTGGATCAGGTGGGTTCCTGCCCCCCGCCCCTCAGAAAG
AAGGCAGTAGCCCCAGGGCCGGCTCGTGTTTGTACATTGCACAGAAACTTGTGTGGGTGC
TTTAGTAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               269-819, + strand, RNAz p=0.99827

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               269-819, + strand, RNAz p=0.99827

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               714-823, + strand, RNAmicro p=0.999931
               

               
               221-373, + strand, RNAmicro p=0.995622

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               714-823, + strand, RNAmicro p=0.999931
               

               
               221-373, + strand, RNAmicro p=0.995622

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               320-819, POSM0100007_B09 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190241.1|), blast E-value=7e-16, identity=93.65% 
               

               
               281-819, LB0272.CR_K10 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887599.1|), 
blast E-value=0.00000000000004, identity=94.64% 
               

               
               281-819, LB02720.CR_M15 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891580.1|), 
blast E-value=0.00000000000004, identity=94.64% 
               

               
               385-819, PADT0811017_A05F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB417956.1|), blast E-value=2e-25, identity=100% 
               

               
               281-819, LB01739.CR_B23 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE335779.1|), 
blast E-value=0.00000000000004, identity=94.64% 
               

               
               281-819, LB02755.CR_N02 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE349566.1|), 
blast E-value=0.00000000000004, identity=94.64%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               320-819, POSM0100007_B09 porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|BM190241.1|), blast E-value=7e-16, identity=93.65% 
               

               
               281-819, LB0272.CR_K10 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV887599.1|), 
blast E-value=0.00000000000004, identity=94.64% 
               

               
               281-819, LB02720.CR_M15 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|DV891580.1|), 
blast E-value=0.00000000000004, identity=94.64% 
               

               
               385-819, PADT0811017_A05F porcine adipose tissue cDNA library (PADT) Sus 
(gb|EB417956.1|), blast E-value=2e-25, identity=100% 
               

               
               281-819, LB01739.CR_B23 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|EE335779.1|), 
blast E-value=0.00000000000004, identity=94.64% 
               

               
               281-819, LB02755.CR_N02 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb|EE349566.1|), 
blast E-value=0.00000000000004, identity=94.64%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC002431, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC002431, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr3 (70969452-70968602)
               

               
               1-852, gnl|Hg17|chr1 (44125076-44125923)
               

               
               1-852, gnl|Mm7|chr4 (117250429-117249583)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr3 (70969452-70968602)
               

               
               1-852, gnl|Hg17|chr1 (44125076-44125923)
               

               
               1-852, gnl|Mm7|chr4 (117250429-117249583)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	714-823, + strand, RNAmicro p=0.999931
	221-373, + strand, RNAmicro p=0.995622

	320-819, POSM0100007_B09 porcine skeletal muscle cDNA library (PoSM) Sus (gb\|BM190241.1\|), blast E-value=7e-16, identity=93.65%
	281-819, LB0272.CR_K10 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV887599.1\|), blast E-value=0.00000000000004, identity=94.64%
	281-819, LB02720.CR_M15 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|DV891580.1\|), blast E-value=0.00000000000004, identity=94.64%
	385-819, PADT0811017_A05F porcine adipose tissue cDNA library (PADT) Sus (gb\|EB417956.1\|), blast E-value=2e-25, identity=100%
	281-819, LB01739.CR_B23 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|EE335779.1\|), blast E-value=0.00000000000004, identity=94.64%
	281-819, LB02755.CR_N02 GC_BGC-27 Bos taurus cDNA clone IMAGE (gb\|EE349566.1\|), blast E-value=0.00000000000004, identity=94.64%

	1-852, gnl\|bosTau2\|chr3 (70969452-70968602)
	1-852, gnl\|Hg17\|chr1 (44125076-44125923)
	1-852, gnl\|Mm7\|chr4 (117250429-117249583)

	ece (0.229305)
	mas (0.210305)
	fcc (0.197785)
	col (0.195008)
	med (0.116252)
	ecc (0.115035)