Non-Coding RNA Search

Ss1.1-Mixc-0029d14.5

Sequence:


               
               GAAAGAATTCGAAAGCACAAAGCAGCTGCTGAGAAGGCGTTCCAGGAAGGAATTGCTAAG
GCAAAACTAGTCATGCGCAGGACTCCAATTGGTACAGATCGAAACCATAATAGATACTGG
CTCTTCTCAGATGAAGTCCCAGGTTTGTTCATTGAGAAAGGATGGGTGCATGACAGCATT
GACTACCGCTTCAGCAACCACCGAAAAGACCGCGCGGCCTCCCCCGATGAGGATTACTGT
CCCCGTAGTATGTATATCTGCTGACTACCTGGCCCTAACATGAACACACAACATGGACCA
GCAACAGAAATTGCTGTAGAGACCACTGTACCCAAACAAGGACAGAACCTATGGTTTTTA
TGTGATAGTCAAAAGGAGCTGGATGAGTTGCTAAACTGCCTTCACTCTCAGGGAATAAGA
GAAAGTCAGCTTAAAGAGAGACTAGAGAAGAGGTACCAGGACATTATTCATTCTATTCAT
CTGGCCCGGAAGCCAAATTTGGGTCTAAAATCCTGTGATGGCAACCAGGAGCTTTTAAAC
TTTCTTCGTAGTGATCTCATTGAAGTTGCAACAAGGTTGCAGAAGGGAGGACTTGGTTAT
GTGGAAGAAACATCAGAATTTGAAGCTCGGGTGATCTCACTGGAGAAATTGAAGGATTTT
GGTGAGTGTGTGATTGCCCTTCAAGCCAGTGTCATAAAGAAATTTCTCNCAGGGCTTCAT
GGCTCCCAAGCAGAAGAGAAGAAAACTCCAAAGCGAAGATTCAGCAAAGACTGAAGAGGT
GGATGAAGAGAAAAAAATGGCAGAGGAGGCAAAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAATTCGAAAGCACAAAGCAGCTGCTGAGAAGGCGTTCCAGGAAGGAATTGCTAAG
GCAAAACTAGTCATGCGCAGGACTCCAATTGGTACAGATCGAAACCATAATAGATACTGG
CTCTTCTCAGATGAAGTCCCAGGTTTGTTCATTGAGAAAGGATGGGTGCATGACAGCATT
GACTACCGCTTCAGCAACCACCGAAAAGACCGCGCGGCCTCCCCCGATGAGGATTACTGT
CCCCGTAGTATGTATATCTGCTGACTACCTGGCCCTAACATGAACACACAACATGGACCA
GCAACAGAAATTGCTGTAGAGACCACTGTACCCAAACAAGGACAGAACCTATGGTTTTTA
TGTGATAGTCAAAAGGAGCTGGATGAGTTGCTAAACTGCCTTCACTCTCAGGGAATAAGA
GAAAGTCAGCTTAAAGAGAGACTAGAGAAGAGGTACCAGGACATTATTCATTCTATTCAT
CTGGCCCGGAAGCCAAATTTGGGTCTAAAATCCTGTGATGGCAACCAGGAGCTTTTAAAC
TTTCTTCGTAGTGATCTCATTGAAGTTGCAACAAGGTTGCAGAAGGGAGGACTTGGTTAT
GTGGAAGAAACATCAGAATTTGAAGCTCGGGTGATCTCACTGGAGAAATTGAAGGATTTT
GGTGAGTGTGTGATTGCCCTTCAAGCCAGTGTCATAAAGAAATTTCTCNCAGGGCTTCAT
GGCTCCCAAGCAGAAGAGAAGAAAACTCCAAAGCGAAGATTCAGCAAAGACTGAAGAGGT
GGATGAAGAGAAAAAAATGGCAGAGGAGGCAAAGGT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               110-259, gnl|bosTau2|chr25 (28220262-28220113)
               

               
               110-259, gnl|Hg17|chr7 (72328635-72328478)
               

               
               110-259, gnl|Mm7|chr5 (134194361-134194510)
               


               
               451-632, gnl|bosTau2|chr25 (28216618-28216437)
               

               
               451-632, gnl|Hg17|chr7 (72322082-72321901)
               

               
               451-632, gnl|Mm7|chr5 (134201435-134201616)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-259, gnl|bosTau2|chr25 (28220262-28220113)
               

               
               110-259, gnl|Hg17|chr7 (72328635-72328478)
               

               
               110-259, gnl|Mm7|chr5 (134194361-134194510)
               


               
               451-632, gnl|bosTau2|chr25 (28216618-28216437)
               

               
               451-632, gnl|Hg17|chr7 (72322082-72321901)
               

               
               451-632, gnl|Mm7|chr5 (134201435-134201616)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	110-259, gnl\|bosTau2\|chr25 (28220262-28220113)
	110-259, gnl\|Hg17\|chr7 (72328635-72328478)
	110-259, gnl\|Mm7\|chr5 (134194361-134194510)

	451-632, gnl\|bosTau2\|chr25 (28216618-28216437)
	451-632, gnl\|Hg17\|chr7 (72322082-72321901)
	451-632, gnl\|Mm7\|chr5 (134201435-134201616)