Non-Coding RNA Search

Ss1.1-Mixc-0029e15.5

Sequence:


               
               TGCAGGCGCAGCCGCTGCGCGAGCGGGCAGAGCCGTTAGTGCGCGCGCGGTCCTCGTGTC
CGTCTATCCGTCCGTCCGTCGGGGCGTCCATCCAGCGGCGCAGAGCCGTTCGCAACCAGG
CCCCAGCGGCCCCGGCCCCTCGTCGTCCCGCACCCGGAGCTGCCGGGCCGAGCCGGCTTT
GGAGCAGCAGCCATGTCCATGGGCCTGGAGATCGCGGGCACCTCGCTAGCCGTCATGGGC
TGGCTGAGCACCATTGTGTGCTGCGCGCTGCCCATGTGGCGCGTCACGGCCTTCATCGGC
AGCAGCATTATCACAGCGCAGATCACCTGGGAGGGCCTGTGGATGAACTGCGTGGTGCAG
AGCACGGGCCAGATGCAGTGCAAAGTGTACGACTCGCTGCTGGCGCTGCCGCAGGACCTG
CAGGCGGCCCGCGCCCTCATCGTCGTCGCCATCCTGCTGGCCGCCTTTGGGCTCCTTGTG
GCGCTTGTGGGCGCCCAGTGCACCAACTGCGTGCAGGACGACACGGCCAAAGCCAAGATC
ACCATCGTGGCGGGTGTGCTCTTTCTGCTGGCCGCCTTGCTCACCCTCGTGCCGGTGTCC
TGGTCGGCCAACACCATCATCCGGGACTTCTACAATCCCTTGGTGCCCGACGCGCAAAAG
CGCGAGATGGGCTCCGCGCTGTACGTGGGCTGGGCGGCCGCCGCGCTGCAGCTGCTGGGG
GGCGCGCTGCTCTGCTGCTCGTGCCCGCCGAGAGAAAAGAAGTACACGCCCGCCAAGATC
CTCTACTCCGCGCCGCGCTCCACCGTCGGGCCGGGCACCGGCACCGGCACGGCCTACGAC
CGCAAGGACTACGTATGAGGGGGCAGCCGCGGAGAGTCCCCACCACCCCCACGAGCTCGT
GCGCCCACCAGTCCTCCGTGCGGCCTTGCATCCGAGACCAGTCCACCCAGATGCTAGGCA
GCTCTCTCGCCGGACTGGGAGGGGCCCGCCCGGTGTCACCCTCCCCAGCTGCCACCCCTC
CTCGGGCCGGGGAGCGGGATTGCGGAGCCCAGAGACCAGTCAGCACGGACCATGAAACCT
CGCCCCTCTGGAGCGCGGGGCCGGGGTGACCGCCGCTACTTGCCTGCCCCGTCGGGCTGT
GGCCTCAGAGCCCTCGCTGGGCAGGGACCCGCAGTCTTGAAAAGGGCCACTTGATATTTT
TCAATAAAAACCTTTCGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGCGCAGCCGCTGCGCGAGCGGGCAGAGCCGTTAGTGCGCGCGCGGTCCTCGTGTC
CGTCTATCCGTCCGTCCGTCGGGGCGTCCATCCAGCGGCGCAGAGCCGTTCGCAACCAGG
CCCCAGCGGCCCCGGCCCCTCGTCGTCCCGCACCCGGAGCTGCCGGGCCGAGCCGGCTTT
GGAGCAGCAGCCATGTCCATGGGCCTGGAGATCGCGGGCACCTCGCTAGCCGTCATGGGC
TGGCTGAGCACCATTGTGTGCTGCGCGCTGCCCATGTGGCGCGTCACGGCCTTCATCGGC
AGCAGCATTATCACAGCGCAGATCACCTGGGAGGGCCTGTGGATGAACTGCGTGGTGCAG
AGCACGGGCCAGATGCAGTGCAAAGTGTACGACTCGCTGCTGGCGCTGCCGCAGGACCTG
CAGGCGGCCCGCGCCCTCATCGTCGTCGCCATCCTGCTGGCCGCCTTTGGGCTCCTTGTG
GCGCTTGTGGGCGCCCAGTGCACCAACTGCGTGCAGGACGACACGGCCAAAGCCAAGATC
ACCATCGTGGCGGGTGTGCTCTTTCTGCTGGCCGCCTTGCTCACCCTCGTGCCGGTGTCC
TGGTCGGCCAACACCATCATCCGGGACTTCTACAATCCCTTGGTGCCCGACGCGCAAAAG
CGCGAGATGGGCTCCGCGCTGTACGTGGGCTGGGCGGCCGCCGCGCTGCAGCTGCTGGGG
GGCGCGCTGCTCTGCTGCTCGTGCCCGCCGAGAGAAAAGAAGTACACGCCCGCCAAGATC
CTCTACTCCGCGCCGCGCTCCACCGTCGGGCCGGGCACCGGCACCGGCACGGCCTACGAC
CGCAAGGACTACGTATGAGGGGGCAGCCGCGGAGAGTCCCCACCACCCCCACGAGCTCGT
GCGCCCACCAGTCCTCCGTGCGGCCTTGCATCCGAGACCAGTCCACCCAGATGCTAGGCA
GCTCTCTCGCCGGACTGGGAGGGGCCCGCCCGGTGTCACCCTCCCCAGCTGCCACCCCTC
CTCGGGCCGGGGAGCGGGATTGCGGAGCCCAGAGACCAGTCAGCACGGACCATGAAACCT
CGCCCCTCTGGAGCGCGGGGCCGGGGTGACCGCCGCTACTTGCCTGCCCCGTCGGGCTGT
GGCCTCAGAGCCCTCGCTGGGCAGGGACCCGCAGTCTTGAAAAGGGCCACTTGATATTTT
TCAATAAAAACCTTTCGTTTTGCAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CLD3_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLD3_CANFA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-1224, gnl|bosTau2|chr25 (30028300-30027070)
               

               
               1-1224, gnl|Hg17|chr7 (72629211-72627978)
               

               
               1-1224, gnl|Mm7|chr5 (133957529-133958753)
               


               
               149-876, gnl|bosTau2|chr17 (43900864-43900145)
               

               
               149-876, gnl|Hg17|chr22 (17886428-17885628)
               

               
               149-876, gnl|Mm7|chr16_random (3263283-3262531)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1224, gnl|bosTau2|chr25 (30028300-30027070)
               

               
               1-1224, gnl|Hg17|chr7 (72629211-72627978)
               

               
               1-1224, gnl|Mm7|chr5 (133957529-133958753)
               


               
               149-876, gnl|bosTau2|chr17 (43900864-43900145)
               

               
               149-876, gnl|Hg17|chr22 (17886428-17885628)
               

               
               149-876, gnl|Mm7|chr16_random (3263283-3262531)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               pla (2.00508)
               

               
               cga (0.558191)
               

               
               col (0.390016)
               

               
               jej (0.296765)
               

               
               ute (0.265569)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (2.00508)
               

               
               cga (0.558191)
               

               
               col (0.390016)
               

               
               jej (0.296765)
               

               
               ute (0.265569)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

	1-1224, gnl\|bosTau2\|chr25 (30028300-30027070)
	1-1224, gnl\|Hg17\|chr7 (72629211-72627978)
	1-1224, gnl\|Mm7\|chr5 (133957529-133958753)

	149-876, gnl\|bosTau2\|chr17 (43900864-43900145)
	149-876, gnl\|Hg17\|chr22 (17886428-17885628)
	149-876, gnl\|Mm7\|chr16_random (3263283-3262531)

	pla (2.00508)
	cga (0.558191)
	col (0.390016)
	jej (0.296765)
	ute (0.265569)
	nlu (0.191681)
	ill (0.175593)
	nco (0.161734)
	cli (0.152812)
	nmm (0.132802)
	clu (0.119646)
	eje (0.0988338)