Non-Coding RNA Search

Ss1.1-Mixc-0029h19.3

Sequence:


               
               GTGTGGTGAGGCGAGTGGAGGAGCTCGGCGACCTGGCGCAGGCCCACATACAACAACTTA
GCGAAGCCGCCGGCGAAGATGATCACTTTTTAATTCGGGCCTCTGCAGCTCTAGAAAAAT
TGAAACTTCTGTGTGGAGAAGACAAAGAATGTTCAAATCCATCAAATCTTCTAGAACTTT
ACACACAGGCTATTTTGGACATGACATATTTTGAGGAGAACAAGCTAGTAGATGAAGATT
TTCCTGAGGATTCTTCAGAGAAAGTAAAAGAGTTGATAAGTTTTCTTTCAGAACCAGAAA
TTTTAGTAAAAGAAAACAATATGCATCCAAAACACTGCGATTTGCTTGGGGATGAACTCC
TGGAATGTCTCTCTTGGAGACGAGGAGCCCTACTTTATATGTACTGTCATTCTCTGACCA
AAAGGAGAGAATGGCTCACAAGAAAATCTAGCTTGCTTAAAAAGTACCTTATTGATGGAA
TCAGTTACTTGATACAGATGCTAAATTTTCGGTGTCCCATCCAGTTAAATGAAGGCGTTT
CTTTCCAAGACCTAGACACAGCTAAATTACTGAGTGAAGGAATATTTAGTGATATTCATT
TGCTGGCTATGATGTACAGTGGAGAAATGTGTTACTGGGGATTGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGGTGAGGCGAGTGGAGGAGCTCGGCGACCTGGCGCAGGCCCACATACAACAACTTA
GCGAAGCCGCCGGCGAAGATGATCACTTTTTAATTCGGGCCTCTGCAGCTCTAGAAAAAT
TGAAACTTCTGTGTGGAGAAGACAAAGAATGTTCAAATCCATCAAATCTTCTAGAACTTT
ACACACAGGCTATTTTGGACATGACATATTTTGAGGAGAACAAGCTAGTAGATGAAGATT
TTCCTGAGGATTCTTCAGAGAAAGTAAAAGAGTTGATAAGTTTTCTTTCAGAACCAGAAA
TTTTAGTAAAAGAAAACAATATGCATCCAAAACACTGCGATTTGCTTGGGGATGAACTCC
TGGAATGTCTCTCTTGGAGACGAGGAGCCCTACTTTATATGTACTGTCATTCTCTGACCA
AAAGGAGAGAATGGCTCACAAGAAAATCTAGCTTGCTTAAAAAGTACCTTATTGATGGAA
TCAGTTACTTGATACAGATGCTAAATTTTCGGTGTCCCATCCAGTTAAATGAAGGCGTTT
CTTTCCAAGACCTAGACACAGCTAAATTACTGAGTGAAGGAATATTTAGTGATATTCATT
TGCTGGCTATGATGTACAGTGGAGAAATGTGTTACTGGGGATTGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51896031|ref|NP_787117.3|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51896031|ref|NP_787117.3|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-464, + strand, RNAz p=0.759897

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-464, + strand, RNAz p=0.759897

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               186-332, gnl|bosTau2|chr20 (19484055-19483909)
               

               
               186-332, gnl|canFam2|chr4 (70880920-70880734)
               

               
               186-332, gnl|dasNov1|scaffold_128468 (4683-4547)
               

               
               186-332, gnl|echTel1|scaffold_305625 (50065-50244)
               

               
               186-332, gnl|galGal2|chrZ (6355159-6355343)
               

               
               186-332, gnl|hg17|chr5 (41945577-41945762)
               

               
               186-332, gnl|Hg17|chr5 (41945602-41945751)
               

               
               186-332, gnl|loxAfr1|scaffold_1154 (61230-61049)
               

               
               186-332, gnl|mm7|chr15 (3819551-3819368)
               

               
               186-332, gnl|Mm7|chr15 (3819526-3819377)
               

               
               186-332, gnl|monDom2|scaffold_20 (28886958-28886773)
               

               
               186-332, gnl|oryCun1|scaffold_139735 (10339-10517)
               

               
               186-332, gnl|panTro1|chr4 (74609901-74609715)
               

               
               186-332, gnl|rheMac2|chr6 (41778023-41778212)
               

               
               186-332, gnl|rn3|chr2 (53824961-53824783)
               

               
               186-332, gnl|tetNig1|chr12 (8753808-8753956)
               


               
               333-464, gnl|bosTau2|chr20 (19482706-19482575)
               

               
               333-464, gnl|Hg17|chr5 (41946907-41947038)
               

               
               333-464, gnl|Mm7|chr15 (3817345-3817214)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               186-332, gnl|bosTau2|chr20 (19484055-19483909)
               

               
               186-332, gnl|canFam2|chr4 (70880920-70880734)
               

               
               186-332, gnl|dasNov1|scaffold_128468 (4683-4547)
               

               
               186-332, gnl|echTel1|scaffold_305625 (50065-50244)
               

               
               186-332, gnl|galGal2|chrZ (6355159-6355343)
               

               
               186-332, gnl|hg17|chr5 (41945577-41945762)
               

               
               186-332, gnl|Hg17|chr5 (41945602-41945751)
               

               
               186-332, gnl|loxAfr1|scaffold_1154 (61230-61049)
               

               
               186-332, gnl|mm7|chr15 (3819551-3819368)
               

               
               186-332, gnl|Mm7|chr15 (3819526-3819377)
               

               
               186-332, gnl|monDom2|scaffold_20 (28886958-28886773)
               

               
               186-332, gnl|oryCun1|scaffold_139735 (10339-10517)
               

               
               186-332, gnl|panTro1|chr4 (74609901-74609715)
               

               
               186-332, gnl|rheMac2|chr6 (41778023-41778212)
               

               
               186-332, gnl|rn3|chr2 (53824961-53824783)
               

               
               186-332, gnl|tetNig1|chr12 (8753808-8753956)
               


               
               333-464, gnl|bosTau2|chr20 (19482706-19482575)
               

               
               333-464, gnl|Hg17|chr5 (41946907-41947038)
               

               
               333-464, gnl|Mm7|chr15 (3817345-3817214)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tra (0.123092)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.123092)

	186-332, gnl\|bosTau2\|chr20 (19484055-19483909)
	186-332, gnl\|canFam2\|chr4 (70880920-70880734)
	186-332, gnl\|dasNov1\|scaffold_128468 (4683-4547)
	186-332, gnl\|echTel1\|scaffold_305625 (50065-50244)
	186-332, gnl\|galGal2\|chrZ (6355159-6355343)
	186-332, gnl\|hg17\|chr5 (41945577-41945762)
	186-332, gnl\|Hg17\|chr5 (41945602-41945751)
	186-332, gnl\|loxAfr1\|scaffold_1154 (61230-61049)
	186-332, gnl\|mm7\|chr15 (3819551-3819368)
	186-332, gnl\|Mm7\|chr15 (3819526-3819377)
	186-332, gnl\|monDom2\|scaffold_20 (28886958-28886773)
	186-332, gnl\|oryCun1\|scaffold_139735 (10339-10517)
	186-332, gnl\|panTro1\|chr4 (74609901-74609715)
	186-332, gnl\|rheMac2\|chr6 (41778023-41778212)
	186-332, gnl\|rn3\|chr2 (53824961-53824783)
	186-332, gnl\|tetNig1\|chr12 (8753808-8753956)

	333-464, gnl\|bosTau2\|chr20 (19482706-19482575)
	333-464, gnl\|Hg17\|chr5 (41946907-41947038)
	333-464, gnl\|Mm7\|chr15 (3817345-3817214)