Ss1.1-Mixc-0029i14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCGGCGGCGGCGCCCGGGCTGTCGCGGCAGCTCCTGCTGACTGGAAGCCGCGGCGAC CGACCGAAGCCGCCGGGACCGCCTGGCGAGCCGGCGAGTTGAGCGGCGAAGAGCCGCCAT GTTTAGATGTTAGCAAGCACATGTGTTCCTGTCTGCTTTTGAAAATGGCAGAGGGAAACA ACAGTGAAGAAGTAATTCACTTGAACAGCTTCCACTGCCACCGGGGACAAGACTGGATCA GTCTCAGAGATGGACCCATCACTATATCTGACTCCTCTGATGAGGAAGGGGTTCCAATGC TGGTTACCCCAGCTCCTCAGCACCATGATGAAGAGGACCTGGATGATGATGTCATCCTGA CAGAGACAAATAAACCTCAGACATCACGACCCAATCTCATCAAACCAGCTGCCCAGTGGC AAGATCTCAAAAGATTGGGAGAAGAAAGGCCTAAAAAGCCTAGAGCAGCCTTTGAATCAG ATAAGAATGGCTTTTTTTCTGTGTGTAACAGCTCATTGTTTGATTCTGGGGCACAGGATG ATTCTGAGGATGACTACGGTGAATTTCTAGATCTTGGGCCTCCTGGAGTTTCTGAATTCA TTAAGCCAAGTGGCCAAAAGGAGAGAGAACCCAAGCCTGGACCAAGTCATAACCAAGCCA CAAATGACATTGTCAATCCCCGGTCAGAGCAGAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCGGCGGCGGCGCCCGGGCTGTCGCGGCAGCTCCTGCTGACTGGAAGCCGCGGCGAC CGACCGAAGCCGCCGGGACCGCCTGGCGAGCCGGCGAGTTGAGCGGCGAAGAGCCGCCAT GTTTAGATGTTAGCAAGCACATGTGTTCCTGTCTGCTTTTGAAAATGGCAGAGGGAAACA ACAGTGAAGAAGTAATTCACTTGAACAGCTTCCACTGCCACCGGGGACAAGACTGGATCA GTCTCAGAGATGGACCCATCACTATATCTGACTCCTCTGATGAGGAAGGGGTTCCAATGC TGGTTACCCCAGCTCCTCAGCACCATGATGAAGAGGACCTGGATGATGATGTCATCCTGA CAGAGACAAATAAACCTCAGACATCACGACCCAATCTCATCAAACCAGCTGCCCAGTGGC AAGATCTCAAAAGATTGGGAGAAGAAAGGCCTAAAAAGCCTAGAGCAGCCTTTGAATCAG ATAAGAATGGCTTTTTTTCTGTGTGTAACAGCTCATTGTTTGATTCTGGGGCACAGGATG ATTCTGAGGATGACTACGGTGAATTTCTAGATCTTGGGCCTCCTGGAGTTTCTGAATTCA TTAAGCCAAGTGGCCAAAAGGAGAGAGAACCCAAGCCTGGACCAAGTCATAACCAAGCCA CAAATGACATTGTCAATCCCCGGTCAGAGCAGAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 349-506, - strand, RNAz p=0.996282 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 349-506, - strand, RNAz p=0.996282 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 115-231, gnl|bosTau2|chr25 (36887869-36887985) | |
| 115-231, gnl|canFam2|chr6 (15212293-15212448) | |
| 115-231, gnl|dasNov1|scaffold_192903 (2637-2479) | |
| 115-231, gnl|echTel1|scaffold_188001 (3948-3806) | |
| 115-231, gnl|galGal2|chr14 (6364475-6364333) | |
| 115-231, gnl|hg17|chr7 (4789133-4789292) | |
| 115-231, gnl|Hg17|chr7 (5573991-5573875) | |
| 115-231, gnl|mm7|chr5 (142131480-142131331) | |
| 115-231, gnl|Mm7|chr5 (142131429-142131313) | |
| 115-231, gnl|monDom2|scaffold_17 (6172696-6172532) | |
| 115-231, gnl|oryCun1|scaffold_180441 (4872-5032) | |
| 115-231, gnl|panTro1|chr6 (5205760-5205919) | |
| 115-231, gnl|rheMac2|chr3 (42989900-42990059) | |
| 115-231, gnl|rn3|chr12 (11891919-11892055) | |
| 349-695, gnl|bosTau2|chr25 (36897535-36897881) | |
| 349-695, gnl|canFam2|chr6 (15229934-15228966) | |
| 349-695, gnl|dasNov1|scaffold_12338 (33887-34854) | |
| 349-695, gnl|echTel1|scaffold_294580 (59327-60281) | |
| 349-695, gnl|galGal2|chr14 (6361302-6362269) | |
| 349-695, gnl|hg17|chr7 (5553829-5554782) | |
| 349-695, gnl|Hg17|chr7 (5554704-5554358) | |
| 349-695, gnl|loxAfr1|scaffold_26474 (25781-24846) | |
| 349-695, gnl|mm7|chr5 (142123039-142123954) | |
| 349-695, gnl|Mm7|chr5 (142123881-142123564) | |
| 349-695, gnl|monDom2|scaffold_17 (6131121-6132056) | |
| 349-695, gnl|oryCun1|scaffold_142778 (2653-3608) | |
| 349-695, gnl|panTro1|chr6 (6013413-6014366) | |
| 349-695, gnl|rheMac2|chr3 (43225694-43224749) | |
| 349-695, gnl|rn3|chr12 (11899356-11898440) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 115-231, gnl|bosTau2|chr25 (36887869-36887985) | |
| 115-231, gnl|canFam2|chr6 (15212293-15212448) | |
| 115-231, gnl|dasNov1|scaffold_192903 (2637-2479) | |
| 115-231, gnl|echTel1|scaffold_188001 (3948-3806) | |
| 115-231, gnl|galGal2|chr14 (6364475-6364333) | |
| 115-231, gnl|hg17|chr7 (4789133-4789292) | |
| 115-231, gnl|Hg17|chr7 (5573991-5573875) | |
| 115-231, gnl|mm7|chr5 (142131480-142131331) | |
| 115-231, gnl|Mm7|chr5 (142131429-142131313) | |
| 115-231, gnl|monDom2|scaffold_17 (6172696-6172532) | |
| 115-231, gnl|oryCun1|scaffold_180441 (4872-5032) | |
| 115-231, gnl|panTro1|chr6 (5205760-5205919) | |
| 115-231, gnl|rheMac2|chr3 (42989900-42990059) | |
| 115-231, gnl|rn3|chr12 (11891919-11892055) | |
| 349-695, gnl|bosTau2|chr25 (36897535-36897881) | |
| 349-695, gnl|canFam2|chr6 (15229934-15228966) | |
| 349-695, gnl|dasNov1|scaffold_12338 (33887-34854) | |
| 349-695, gnl|echTel1|scaffold_294580 (59327-60281) | |
| 349-695, gnl|galGal2|chr14 (6361302-6362269) | |
| 349-695, gnl|hg17|chr7 (5553829-5554782) | |
| 349-695, gnl|Hg17|chr7 (5554704-5554358) | |
| 349-695, gnl|loxAfr1|scaffold_26474 (25781-24846) | |
| 349-695, gnl|mm7|chr5 (142123039-142123954) | |
| 349-695, gnl|Mm7|chr5 (142123881-142123564) | |
| 349-695, gnl|monDom2|scaffold_17 (6131121-6132056) | |
| 349-695, gnl|oryCun1|scaffold_142778 (2653-3608) | |
| 349-695, gnl|panTro1|chr6 (6013413-6014366) | |
| 349-695, gnl|rheMac2|chr3 (43225694-43224749) | |
| 349-695, gnl|rn3|chr12 (11899356-11898440) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) |