Ss1.1-Mixc-0029i17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTAACACATGGATTTCCTTCCAAAAATGCAGACCCATTTTAATTAAATTTGTCCTTAAC CTTTGAGAGGGCAGGCCCCTGGATTCCGTCTGCTTTCGGAGACGCTGCCAAGATGGGTGT CACAGCCGTGCTCGTGCTGCCCTTGCTGCTCTTGGGGATCAGCGGCCTCCTCTTCATCTA TCAGGAGGTGTCCAGGTTGTGGTCCAAGTCCGCCGTGCAGAACAAAGTGGTGGTCATTAC TGATGCCATCTCAGGACTGGGCAAGGAGTGTGCGCGGGTGTTCCACACCGGCGGGGCCAG GCTGGTGCTGTGCGGAAAGAACTGGGAGAGGCTTCAGACCCTGTACGATGCCCTCATCAG CGTGGCTGACCCCAGCAAGACATTCACCCCAAAGCTGGTCCTCTTGGACCTCTCGGACAT CAGCTGCGTCCAGGATGTGGCCAAAGAGGTCCTGGATTGCTACGGCTGCGTGGACATCCT CATCAGCAATGCCAGCATGAAGGTGAAAGGACCTGCCCATAAGATTTCTCTGGAGCTTGA CAAAAAGATCATGGACGCCAATTACTTTGGACCCATCACATTGACCAAAGCCCTGCTTCC CAACATGATCTCCAGGAGGACCGGCCAAATCGTGCTGGTGAATAACATCCAAGGGAGGCT GGGGATCCCGTTCCGCACGGCCTACGCTGCCTCCAAGCACGCGGCGCTGGGCTTCTTCGA CTGCCTGCGGGCGGAGGTGGAGGAGTTCGACGTGGTTGTCAGCACTGTGAGCCCCACTTT CATCCGCTCCTACCACGTTGATCCCGGCCAAGGGAACTGGGAGGCCTCCCTCTGGAAATT CTTTTTCAGGAAGCTGACCTACGGGGCGCACCCGGTGGACGTGGCGGAGGAGGTGATGCG CACCGTGAGACGGAAGAAGCAGGAGGTCTTCCTGGCCAACCCCATCCCCAGGGCCGCCAT GTACGTCCGCACCTTCTTCCCCGAGTTCTTTTTCGCCGTGGTGGCCTGTGGGGTGAAGGA GAAGCTCAACGTCCCAGAGGAGGGTTAACGGCAGGGGCCAGACGGTTCCCCCCACCCAGG GAATAAAGGCTTTCCTGGCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTAACACATGGATTTCCTTCCAAAAATGCAGACCCATTTTAATTAAATTTGTCCTTAAC CTTTGAGAGGGCAGGCCCCTGGATTCCGTCTGCTTTCGGAGACGCTGCCAAGATGGGTGT CACAGCCGTGCTCGTGCTGCCCTTGCTGCTCTTGGGGATCAGCGGCCTCCTCTTCATCTA TCAGGAGGTGTCCAGGTTGTGGTCCAAGTCCGCCGTGCAGAACAAAGTGGTGGTCATTAC TGATGCCATCTCAGGACTGGGCAAGGAGTGTGCGCGGGTGTTCCACACCGGCGGGGCCAG GCTGGTGCTGTGCGGAAAGAACTGGGAGAGGCTTCAGACCCTGTACGATGCCCTCATCAG CGTGGCTGACCCCAGCAAGACATTCACCCCAAAGCTGGTCCTCTTGGACCTCTCGGACAT CAGCTGCGTCCAGGATGTGGCCAAAGAGGTCCTGGATTGCTACGGCTGCGTGGACATCCT CATCAGCAATGCCAGCATGAAGGTGAAAGGACCTGCCCATAAGATTTCTCTGGAGCTTGA CAAAAAGATCATGGACGCCAATTACTTTGGACCCATCACATTGACCAAAGCCCTGCTTCC CAACATGATCTCCAGGAGGACCGGCCAAATCGTGCTGGTGAATAACATCCAAGGGAGGCT GGGGATCCCGTTCCGCACGGCCTACGCTGCCTCCAAGCACGCGGCGCTGGGCTTCTTCGA CTGCCTGCGGGCGGAGGTGGAGGAGTTCGACGTGGTTGTCAGCACTGTGAGCCCCACTTT CATCCGCTCCTACCACGTTGATCCCGGCCAAGGGAACTGGGAGGCCTCCCTCTGGAAATT CTTTTTCAGGAAGCTGACCTACGGGGCGCACCCGGTGGACGTGGCGGAGGAGGTGATGCG CACCGTGAGACGGAAGAAGCAGGAGGTCTTCCTGGCCAACCCCATCCCCAGGGCCGCCAT GTACGTCCGCACCTTCTTCCCCGAGTTCTTTTTCGCCGTGGTGGCCTGTGGGGTGAAGGA GAAGCTCAACGTCCCAGAGGAGGGTTAACGGCAGGGGCCAGACGGTTCCCCCCACCCAGG GAATAAAGGCTTTCCTGGCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 1-107, gnl|bosTau2|chr19 (21825986-21825880) | |
| 1-107, gnl|canFam2|chr5 (37233032-37233335) | |
| 1-107, gnl|dasNov1|scaffold_14900 (9855-10149) | |
| 1-107, gnl|echTel1|scaffold_302535 (26365-26074) | |
| 1-107, gnl|hg17|chr17 (9635371-9635640) | |
| 1-107, gnl|Hg17|chr17 (9635613-9635505) | |
| 1-107, gnl|loxAfr1|scaffold_44526 (28251-27931) | |
| 1-107, gnl|mm7|chr11 (67880149-67879838) | |
| 1-107, gnl|Mm7|chr11 (67879863-67879970) | |
| 1-107, gnl|monDom2|scaffold_18 (3942253-3941887) | |
| 1-107, gnl|oryCun1|scaffold_82085 (2562-2238) | |
| 1-107, gnl|panTro1|chr19_random (28792963-28792694) | |
| 1-107, gnl|rn3|chr10 (54532041-54531732) | |
| 109-266, gnl|bosTau2|chr19 (21825676-21825519) | |
| 109-266, gnl|canFam2|chr5 (37232832-37232975) | |
| 109-266, gnl|danRer3|chr12 (210623-210766) | |
| 109-266, gnl|dasNov1|scaffold_14900 (9654-9797) | |
| 109-266, gnl|echTel1|scaffold_302535 (26564-26421) | |
| 109-266, gnl|galGal2|chr18 (80190-80047) | |
| 109-266, gnl|hg17|chr17 (9635170-9635313) | |
| 109-266, gnl|Hg17|chr17 (9635330-9635173) | |
| 109-266, gnl|loxAfr1|scaffold_44526 (28449-28306) | |
| 109-266, gnl|mm7|chr11 (67880350-67880207) | |
| 109-266, gnl|Mm7|chr11 (67880188-67880345) | |
| 109-266, gnl|monDom2|scaffold_18 (3942465-3942322) | |
| 109-266, gnl|oryCun1|scaffold_82085 (2764-2621) | |
| 109-266, gnl|panTro1|chr19_random (28793164-28793021) | |
| 109-266, gnl|rn3|chr10 (54532234-54532091) | |
| 109-266, gnl|tetNig1|chrUn_random (4012987-4012844) | |
| 372-590, gnl|bosTau2|chr19 (21820865-21820648) | |
| 372-590, gnl|canFam2|chr5 (37222374-37222623) | |
| 372-590, gnl|danRer3|chr12 (208510-208725) | |
| 372-590, gnl|echTel1|scaffold_210608 (4641-4400) | |
| 372-590, gnl|fr1|chrUn (120904036-120903817) | |
| 372-590, gnl|galGal2|chr18 (85152-84907) | |
| 372-590, gnl|hg17|chr17 (9623849-9624098) | |
| 372-590, gnl|Hg17|chr17 (9624084-9623867) | |
| 372-590, gnl|loxAfr1|scaffold_11237 (58957-59186) | |
| 372-590, gnl|mm7|chr11 (67893251-67893002) | |
| 372-590, gnl|Mm7|chr11 (67893014-67893231) | |
| 372-590, gnl|monDom2|scaffold_18 (3970497-3970245) | |
| 372-590, gnl|oryCun1|scaffold_140250 (11177-11426) | |
| 372-590, gnl|panTro1|chr19_random (28804646-28804397) | |
| 372-590, gnl|rheMac2|chr16 (9532199-9532448) | |
| 372-590, gnl|rn3|chr10 (54544145-54543896) | |
| 372-590, gnl|tetNig1|chrUn_random (4014347-4014133) | |
| 372-590, gnl|xenTro1|scaffold_135 (1179283-1179069) | |
| 686-839, gnl|bosTau2|chr19 (21815090-21814937) | |
| 686-839, gnl|Hg17|chr17 (9616962-9616809) | |
| 686-839, gnl|Mm7|chr11 (67896562-67896715) | |
| 840-1098, gnl|bosTau2|chr19 (21812945-21812688) | |
| 840-1098, gnl|Hg17|chr17 (9615738-9615482) | |
| 840-1098, gnl|Mm7|chr11 (67897311-67897565) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-107, gnl|bosTau2|chr19 (21825986-21825880) | |
| 1-107, gnl|canFam2|chr5 (37233032-37233335) | |
| 1-107, gnl|dasNov1|scaffold_14900 (9855-10149) | |
| 1-107, gnl|echTel1|scaffold_302535 (26365-26074) | |
| 1-107, gnl|hg17|chr17 (9635371-9635640) | |
| 1-107, gnl|Hg17|chr17 (9635613-9635505) | |
| 1-107, gnl|loxAfr1|scaffold_44526 (28251-27931) | |
| 1-107, gnl|mm7|chr11 (67880149-67879838) | |
| 1-107, gnl|Mm7|chr11 (67879863-67879970) | |
| 1-107, gnl|monDom2|scaffold_18 (3942253-3941887) | |
| 1-107, gnl|oryCun1|scaffold_82085 (2562-2238) | |
| 1-107, gnl|panTro1|chr19_random (28792963-28792694) | |
| 1-107, gnl|rn3|chr10 (54532041-54531732) | |
| 109-266, gnl|bosTau2|chr19 (21825676-21825519) | |
| 109-266, gnl|canFam2|chr5 (37232832-37232975) | |
| 109-266, gnl|danRer3|chr12 (210623-210766) | |
| 109-266, gnl|dasNov1|scaffold_14900 (9654-9797) | |
| 109-266, gnl|echTel1|scaffold_302535 (26564-26421) | |
| 109-266, gnl|galGal2|chr18 (80190-80047) | |
| 109-266, gnl|hg17|chr17 (9635170-9635313) | |
| 109-266, gnl|Hg17|chr17 (9635330-9635173) | |
| 109-266, gnl|loxAfr1|scaffold_44526 (28449-28306) | |
| 109-266, gnl|mm7|chr11 (67880350-67880207) | |
| 109-266, gnl|Mm7|chr11 (67880188-67880345) | |
| 109-266, gnl|monDom2|scaffold_18 (3942465-3942322) | |
| 109-266, gnl|oryCun1|scaffold_82085 (2764-2621) | |
| 109-266, gnl|panTro1|chr19_random (28793164-28793021) | |
| 109-266, gnl|rn3|chr10 (54532234-54532091) | |
| 109-266, gnl|tetNig1|chrUn_random (4012987-4012844) | |
| 372-590, gnl|bosTau2|chr19 (21820865-21820648) | |
| 372-590, gnl|canFam2|chr5 (37222374-37222623) | |
| 372-590, gnl|danRer3|chr12 (208510-208725) | |
| 372-590, gnl|echTel1|scaffold_210608 (4641-4400) | |
| 372-590, gnl|fr1|chrUn (120904036-120903817) | |
| 372-590, gnl|galGal2|chr18 (85152-84907) | |
| 372-590, gnl|hg17|chr17 (9623849-9624098) | |
| 372-590, gnl|Hg17|chr17 (9624084-9623867) | |
| 372-590, gnl|loxAfr1|scaffold_11237 (58957-59186) | |
| 372-590, gnl|mm7|chr11 (67893251-67893002) | |
| 372-590, gnl|Mm7|chr11 (67893014-67893231) | |
| 372-590, gnl|monDom2|scaffold_18 (3970497-3970245) | |
| 372-590, gnl|oryCun1|scaffold_140250 (11177-11426) | |
| 372-590, gnl|panTro1|chr19_random (28804646-28804397) | |
| 372-590, gnl|rheMac2|chr16 (9532199-9532448) | |
| 372-590, gnl|rn3|chr10 (54544145-54543896) | |
| 372-590, gnl|tetNig1|chrUn_random (4014347-4014133) | |
| 372-590, gnl|xenTro1|scaffold_135 (1179283-1179069) | |
| 686-839, gnl|bosTau2|chr19 (21815090-21814937) | |
| 686-839, gnl|Hg17|chr17 (9616962-9616809) | |
| 686-839, gnl|Mm7|chr11 (67896562-67896715) | |
| 840-1098, gnl|bosTau2|chr19 (21812945-21812688) | |
| 840-1098, gnl|Hg17|chr17 (9615738-9615482) | |
| 840-1098, gnl|Mm7|chr11 (67897311-67897565) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| hlv (0.696282) | |
| mas (0.42061) | |
| ssp (0.406559) | |
| ton (0.351) | |
| ese (0.253004) | |
| eru (0.240096) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (0.696282) | |
| mas (0.42061) | |
| ssp (0.406559) | |
| ton (0.351) | |
| ese (0.253004) | |
| eru (0.240096) |