Ss1.1-Mixc-0029k04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGACCTCCGCCAGGAAAGTGGGAACAATGAGGTCATCTTCATGGCCTTGGACTTGGCCAG TCTGGCCTCCGTGAGGGCCTTTGCCACTGCCTTCCTGAGCTCTGAGCCACGGCTGGACAT CCTCATCCACAATGCCGGGATCAGTTCCTGTGGCCGGACCCGCGAGCCCTTTAACCTGCT GTTGCGAGTGAACCACGTCGGCCCCTTTCTGCTGACACACCTGCTGCTGCCCCGGCTGAA GACATGCGCCCCCAGCCGCGTGGTGGTGGTGTCCTCGGCTGCTCACCGGCGAGGCCGCCT CGACTTCACACGCCTGGACCGCCCAGTGGTAGGCTGGCGGCAGGAGCTGCGGGCATATGC AGATAGTAAGCTGGCCAATGTACTGTTTACCAGGGAGCTTGCCACTCAGCTTGAGGGCAC TGGCGTCACCTGCTATGCAGCCCACCCAGGTCCCGTCAACTCAGAGTTGTTCCTACGCCA CGTTCCCAGATGGCTACGCCCACTTTTGTGCCCACTGGCTTGGCTGGTGCTGCGGGCACC ACGAGGGGGTGCCCAGACACCTCTGTACTGCGCTCTGCAGGAGGGCATTGAGCCCCTCAG TGGGAGATACTTTGCCAACTGCCATGTGGAAGAGGTGCCCCCAGCCGCCAGAGACGACCG GGCAGCCCATCGGCTGTGGGAGGCCAGCAAAAGGCTGGCAGGGCTTGAGCCAGGGGAAGA TGCTGAATCTGATGAAGAGCCCCAGCCTGTGGACCCAGGAGTCCCATCTTCTCTGAGCAG CCCCCACCCTGAGGAGCCCGCAGCTTCTGAACCCTACACCAGCCCTCAGAGTTCACCAGA CTTGTCCAAGGTCACACGCCGAATTCCAGTTAAAGCTGAACCAGAGCCCCAAGCCTCCTA ACCTCCGGGCTGGGAAGCTTTCTAAGGCTCTGGGTGGTCCTTGAAAGCCTTAGCCATGTA CCAGGCTATGGTCATGCACTGGACACTGAGGTGGTTGAGATTTTTACCTCCATGGTCACT TTGTGGGGGCTTCAAGGTATATGTCCTGGAGAGCTCTTTTCCTGGTTGAAGGAAATAAAG GGTGATGATTTCTTAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGACCTCCGCCAGGAAAGTGGGAACAATGAGGTCATCTTCATGGCCTTGGACTTGGCCAG TCTGGCCTCCGTGAGGGCCTTTGCCACTGCCTTCCTGAGCTCTGAGCCACGGCTGGACAT CCTCATCCACAATGCCGGGATCAGTTCCTGTGGCCGGACCCGCGAGCCCTTTAACCTGCT GTTGCGAGTGAACCACGTCGGCCCCTTTCTGCTGACACACCTGCTGCTGCCCCGGCTGAA GACATGCGCCCCCAGCCGCGTGGTGGTGGTGTCCTCGGCTGCTCACCGGCGAGGCCGCCT CGACTTCACACGCCTGGACCGCCCAGTGGTAGGCTGGCGGCAGGAGCTGCGGGCATATGC AGATAGTAAGCTGGCCAATGTACTGTTTACCAGGGAGCTTGCCACTCAGCTTGAGGGCAC TGGCGTCACCTGCTATGCAGCCCACCCAGGTCCCGTCAACTCAGAGTTGTTCCTACGCCA CGTTCCCAGATGGCTACGCCCACTTTTGTGCCCACTGGCTTGGCTGGTGCTGCGGGCACC ACGAGGGGGTGCCCAGACACCTCTGTACTGCGCTCTGCAGGAGGGCATTGAGCCCCTCAG TGGGAGATACTTTGCCAACTGCCATGTGGAAGAGGTGCCCCCAGCCGCCAGAGACGACCG GGCAGCCCATCGGCTGTGGGAGGCCAGCAAAAGGCTGGCAGGGCTTGAGCCAGGGGAAGA TGCTGAATCTGATGAAGAGCCCCAGCCTGTGGACCCAGGAGTCCCATCTTCTCTGAGCAG CCCCCACCCTGAGGAGCCCGCAGCTTCTGAACCCTACACCAGCCCTCAGAGTTCACCAGA CTTGTCCAAGGTCACACGCCGAATTCCAGTTAAAGCTGAACCAGAGCCCCAAGCCTCCTA ACCTCCGGGCTGGGAAGCTTTCTAAGGCTCTGGGTGGTCCTTGAAAGCCTTAGCCATGTA CCAGGCTATGGTCATGCACTGGACACTGAGGTGGTTGAGATTTTTACCTCCATGGTCACT TTGTGGGGGCTTCAAGGTATATGTCCTGGAGAGCTCTTTTCCTGGTTGAAGGAAATAAAG GGTGATGATTTCTTAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 447-645, - strand, RNAz p=0.744618 | |
| 726-842, - strand, RNAz p=0.998911 | |
| 986-1093, + strand, RNAz p=0.596887 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 447-645, - strand, RNAz p=0.744618 | |
| 726-842, - strand, RNAz p=0.998911 | |
| 986-1093, + strand, RNAz p=0.596887 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 11-138, gnl|bosTau2|chr19 (13815592-13815465) | |
| 11-138, gnl|canFam2|chr9 (46395748-46395900) | |
| 11-138, gnl|danRer3|chr15 (30983519-30983659) | |
| 11-138, gnl|echTel1|scaffold_318787 (1015-1167) | |
| 11-138, gnl|fr1|chrUn (302964770-302964638) | |
| 11-138, gnl|galGal2|chr19 (5500445-5500607) | |
| 11-138, gnl|hg17|chr17 (24252635-24252787) | |
| 11-138, gnl|Hg17|chr17 (24252763-24252636) | |
| 11-138, gnl|mm7|chr11 (78115715-78115563) | |
| 11-138, gnl|Mm7|chr11 (78115585-78115712) | |
| 11-138, gnl|monDom2|scaffold_44 (14832842-14833003) | |
| 11-138, gnl|oryCun1|scaffold_211733 (42691-42539) | |
| 11-138, gnl|panTro1|chr19 (27597387-27597539) | |
| 11-138, gnl|rheMac2|chr16 (24118095-24118247) | |
| 11-138, gnl|rn3|chr10 (64091436-64091284) | |
| 11-138, gnl|tetNig1|chrUn_random (90909287-90909150) | |
| 11-138, gnl|xenTro1|scaffold_370 (1132624-1132481) | |
| 447-906, gnl|bosTau2|chr19 (13812952-13812493) | |
| 447-906, gnl|Hg17|chr17 (24250039-24249583) | |
| 447-906, gnl|Mm7|chr11 (78118434-78118896) | |
| 912-1093, gnl|bosTau2|chr19 (13812452-13812279) | |
| 912-1093, gnl|canFam2|chr9 (46393000-46393443) | |
| 912-1093, gnl|dasNov1|scaffold_55552 (6515-6954) | |
| 912-1093, gnl|hg17|chr17 (24249263-24249705) | |
| 912-1093, gnl|Hg17|chr17 (24249574-24249403) | |
| 912-1093, gnl|mm7|chr11 (78119180-78118773) | |
| 912-1093, gnl|panTro1|chr19 (27594018-27594460) | |
| 912-1093, gnl|rheMac2|chr16 (24114753-24115199) | |
| 912-1093, gnl|rn3|chr10 (64094580-64094183) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-138, gnl|bosTau2|chr19 (13815592-13815465) | |
| 11-138, gnl|canFam2|chr9 (46395748-46395900) | |
| 11-138, gnl|danRer3|chr15 (30983519-30983659) | |
| 11-138, gnl|echTel1|scaffold_318787 (1015-1167) | |
| 11-138, gnl|fr1|chrUn (302964770-302964638) | |
| 11-138, gnl|galGal2|chr19 (5500445-5500607) | |
| 11-138, gnl|hg17|chr17 (24252635-24252787) | |
| 11-138, gnl|Hg17|chr17 (24252763-24252636) | |
| 11-138, gnl|mm7|chr11 (78115715-78115563) | |
| 11-138, gnl|Mm7|chr11 (78115585-78115712) | |
| 11-138, gnl|monDom2|scaffold_44 (14832842-14833003) | |
| 11-138, gnl|oryCun1|scaffold_211733 (42691-42539) | |
| 11-138, gnl|panTro1|chr19 (27597387-27597539) | |
| 11-138, gnl|rheMac2|chr16 (24118095-24118247) | |
| 11-138, gnl|rn3|chr10 (64091436-64091284) | |
| 11-138, gnl|tetNig1|chrUn_random (90909287-90909150) | |
| 11-138, gnl|xenTro1|scaffold_370 (1132624-1132481) | |
| 447-906, gnl|bosTau2|chr19 (13812952-13812493) | |
| 447-906, gnl|Hg17|chr17 (24250039-24249583) | |
| 447-906, gnl|Mm7|chr11 (78118434-78118896) | |
| 912-1093, gnl|bosTau2|chr19 (13812452-13812279) | |
| 912-1093, gnl|canFam2|chr9 (46393000-46393443) | |
| 912-1093, gnl|dasNov1|scaffold_55552 (6515-6954) | |
| 912-1093, gnl|hg17|chr17 (24249263-24249705) | |
| 912-1093, gnl|Hg17|chr17 (24249574-24249403) | |
| 912-1093, gnl|mm7|chr11 (78119180-78118773) | |
| 912-1093, gnl|panTro1|chr19 (27594018-27594460) | |
| 912-1093, gnl|rheMac2|chr16 (24114753-24115199) | |
| 912-1093, gnl|rn3|chr10 (64094580-64094183) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) | |
| ebs (0.118301) |