Ss1.1-Mixc-0029l05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTGGCTGCCCTCCATGTGTGGAAGTTCCCAGGCCAGGGACTGAACCCATGCCACAGC AGTGACAACGCGGGATCCTCAACTCGCAGCACCAGAGGAGAACTCCAGGAAGAAGTTCCT TGAATGTGTGCAGGACTCCCGCCCCCGCCCCCGCCCCAGCCACCTTTCCTCTTTCTTCCT CCCTAGATGTCCCTGGATATGCTTCAATGTACCTCCACACAGAGGCTTTCTCCGGGCCCC CTCCCGGTGAGGGGACCATGGGCTATGGCTGTGAGAAACCCCTGCGACCGTTCCCAGATG ATGTCTGCATCGTCCCCGAGAAATTTGAAGGTGACATCAAGCAGGAAGGGGTGGGAGCCT TCCGAGAGGGACCACCCTACCAGCGTCGGGGTGCCTTGCAGCTGTGGCAGTTTCTGGTGG CCCTGCTGGATGACCCGACAAATGCCCACTTCATTGCCTGGACCGGCCGGGGGATGGAGT TCAAACTAATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAG CTATGAACTATGACAAACTGAGCCGCTCACTCCGGTACTACTATGAGAAAGGCATCATGC AGAAGGTGGCCGGCGAGCGTTACGTGTACAAGTTTGTGTGCGAGCCCGAGGCCCTCTTCT CTCTGGCTTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCCGAGTTGGACCGGCCAGTCA GTGAGGAGGACACAGTCCCTTTGTCCCACCTGGACGAGAGCCCCGCCTACCTCCCAGAGC TGGCTGGGCCTGCCCAGCCCTTTGGCCCCAAGGGTGGCTACTCTTACTAGCCCCCAGCAG CTGCTCCCCTGCGGCCAGCAGGTGCTGCCCTGTGTGTATATAGAGATGAATCTGGTGTCA GGGAAACCCCCACTCTGAAACCCACAGATGTCTTTGGAGCAGATCCCCTCTGCCCATCAG TCACCCCGGCCCAGCCTCTGAGCTGCTCCCCAGGGTTGACGGGAAGGCAAAGTGGAGACA CTTAAGGGTGTGAAGGTGGCATCGCGGAAGCTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTGGCTGCCCTCCATGTGTGGAAGTTCCCAGGCCAGGGACTGAACCCATGCCACAGC AGTGACAACGCGGGATCCTCAACTCGCAGCACCAGAGGAGAACTCCAGGAAGAAGTTCCT TGAATGTGTGCAGGACTCCCGCCCCCGCCCCCGCCCCAGCCACCTTTCCTCTTTCTTCCT CCCTAGATGTCCCTGGATATGCTTCAATGTACCTCCACACAGAGGCTTTCTCCGGGCCCC CTCCCGGTGAGGGGACCATGGGCTATGGCTGTGAGAAACCCCTGCGACCGTTCCCAGATG ATGTCTGCATCGTCCCCGAGAAATTTGAAGGTGACATCAAGCAGGAAGGGGTGGGAGCCT TCCGAGAGGGACCACCCTACCAGCGTCGGGGTGCCTTGCAGCTGTGGCAGTTTCTGGTGG CCCTGCTGGATGACCCGACAAATGCCCACTTCATTGCCTGGACCGGCCGGGGGATGGAGT TCAAACTAATTGAGCCTGAGGAGGTCGCCAGGCTCTGGGGCATCCAGAAGAACCGGCCAG CTATGAACTATGACAAACTGAGCCGCTCACTCCGGTACTACTATGAGAAAGGCATCATGC AGAAGGTGGCCGGCGAGCGTTACGTGTACAAGTTTGTGTGCGAGCCCGAGGCCCTCTTCT CTCTGGCTTTCCCGGACAATCAGCGTCCAGCTCTCAAGGCCGAGTTGGACCGGCCAGTCA GTGAGGAGGACACAGTCCCTTTGTCCCACCTGGACGAGAGCCCCGCCTACCTCCCAGAGC TGGCTGGGCCTGCCCAGCCCTTTGGCCCCAAGGGTGGCTACTCTTACTAGCCCCCAGCAG CTGCTCCCCTGCGGCCAGCAGGTGCTGCCCTGTGTGTATATAGAGATGAATCTGGTGTCA GGGAAACCCCCACTCTGAAACCCACAGATGTCTTTGGAGCAGATCCCCTCTGCCCATCAG TCACCCCGGCCCAGCCTCTGAGCTGCTCCCCAGGGTTGACGGGAAGGCAAAGTGGAGACA CTTAAGGGTGTGAAGGTGGCATCGCGGAAGCTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 148-269, - strand, RNAz p=0.9938 | |
| 905-1023, - strand, RNAz p=0.945576 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 148-269, - strand, RNAz p=0.9938 | |
| 905-1023, - strand, RNAz p=0.945576 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 119-269, gnl|bosTau2|chr19 (38671122-38671274) | |
| 119-269, gnl|Hg17|chr17 (38963160-38962994) | |
| 119-269, gnl|Mm7|chr11 (101881069-101880913) | |
| 399-634, gnl|bosTau2|chr1 (97925351-97925116) | |
| 399-634, gnl|canFam2|chr31 (35578124-35578454) | |
| 399-634, gnl|danRer3|chrNA (176151452-176151758) | |
| 399-634, gnl|dasNov1|scaffold_209 (145784-146127) | |
| 399-634, gnl|echTel1|scaffold_282214 (21801-21460) | |
| 399-634, gnl|fr1|chrUn (10231737-10231407) | |
| 399-634, gnl|galGal2|chr1 (101290830-101291171) | |
| 399-634, gnl|hg17|chr21 (38677414-38677758) | |
| 399-634, gnl|Hg17|chr21 (38677701-38677466) | |
| 399-634, gnl|loxAfr1|scaffold_2015 (110615-110271) | |
| 399-634, gnl|mm7|chr16 (95667945-95668281) | |
| 399-634, gnl|Mm7|chr16 (95668232-95667997) | |
| 399-634, gnl|monDom2|scaffold_29 (4095626-4095289) | |
| 399-634, gnl|oryCun1|scaffold_211359 (49594-49290) | |
| 399-634, gnl|panTro1|chr22 (38714504-38714848) | |
| 399-634, gnl|rheMac2|chr3 (8254846-8254502) | |
| 399-634, gnl|rn3|chr11 (35712400-35712736) | |
| 399-634, gnl|tetNig1|chrUn_random (14258667-14258361) | |
| 399-634, gnl|xenTro1|scaffold_440 (8648-8980) | |
| 402-589, gnl|bosTau2|chr16 (1495898-1495711) | |
| 402-589, gnl|canFam2|chr38 (5083560-5083814) | |
| 402-589, gnl|danRer3|chr11 (41123559-41123351) | |
| 402-589, gnl|dasNov1|scaffold_25341 (6518-6292) | |
| 402-589, gnl|echTel1|scaffold_230245 (2821-3071) | |
| 402-589, gnl|fr1|chrUn (172978311-172978553) | |
| 402-589, gnl|galGal2|chr26 (802971-803196) | |
| 402-589, gnl|hg17|chr1 (202324458-202324709) | |
| 402-589, gnl|Hg17|chr1 (202324649-202324462) | |
| 402-589, gnl|loxAfr1|scaffold_5895 (30805-31058) | |
| 402-589, gnl|mm7|chr1 (131910068-131909834) | |
| 402-589, gnl|Mm7|chr1 (131909875-131910062) | |
| 402-589, gnl|monDom2|scaffold_13 (7419503-7419763) | |
| 402-589, gnl|oryCun1|scaffold_128399 (619-868) | |
| 402-589, gnl|panTro1|chr1 (185282456-185282707) | |
| 402-589, gnl|rheMac2|chr1 (164791392-164791141) | |
| 402-589, gnl|rn3|chr13 (44911779-44911545) | |
| 402-589, gnl|tetNig1|chr11 (10612607-10612817) | |
| 402-589, gnl|xenTro1|scaffold_19 (3741344-3741572) | |
| 865-1056, gnl|bosTau2|chr12 (30916701-30916513) | |
| 865-1056, gnl|Hg17|chr17 (38961377-38961195) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-269, gnl|bosTau2|chr19 (38671122-38671274) | |
| 119-269, gnl|Hg17|chr17 (38963160-38962994) | |
| 119-269, gnl|Mm7|chr11 (101881069-101880913) | |
| 399-634, gnl|bosTau2|chr1 (97925351-97925116) | |
| 399-634, gnl|canFam2|chr31 (35578124-35578454) | |
| 399-634, gnl|danRer3|chrNA (176151452-176151758) | |
| 399-634, gnl|dasNov1|scaffold_209 (145784-146127) | |
| 399-634, gnl|echTel1|scaffold_282214 (21801-21460) | |
| 399-634, gnl|fr1|chrUn (10231737-10231407) | |
| 399-634, gnl|galGal2|chr1 (101290830-101291171) | |
| 399-634, gnl|hg17|chr21 (38677414-38677758) | |
| 399-634, gnl|Hg17|chr21 (38677701-38677466) | |
| 399-634, gnl|loxAfr1|scaffold_2015 (110615-110271) | |
| 399-634, gnl|mm7|chr16 (95667945-95668281) | |
| 399-634, gnl|Mm7|chr16 (95668232-95667997) | |
| 399-634, gnl|monDom2|scaffold_29 (4095626-4095289) | |
| 399-634, gnl|oryCun1|scaffold_211359 (49594-49290) | |
| 399-634, gnl|panTro1|chr22 (38714504-38714848) | |
| 399-634, gnl|rheMac2|chr3 (8254846-8254502) | |
| 399-634, gnl|rn3|chr11 (35712400-35712736) | |
| 399-634, gnl|tetNig1|chrUn_random (14258667-14258361) | |
| 399-634, gnl|xenTro1|scaffold_440 (8648-8980) | |
| 402-589, gnl|bosTau2|chr16 (1495898-1495711) | |
| 402-589, gnl|canFam2|chr38 (5083560-5083814) | |
| 402-589, gnl|danRer3|chr11 (41123559-41123351) | |
| 402-589, gnl|dasNov1|scaffold_25341 (6518-6292) | |
| 402-589, gnl|echTel1|scaffold_230245 (2821-3071) | |
| 402-589, gnl|fr1|chrUn (172978311-172978553) | |
| 402-589, gnl|galGal2|chr26 (802971-803196) | |
| 402-589, gnl|hg17|chr1 (202324458-202324709) | |
| 402-589, gnl|Hg17|chr1 (202324649-202324462) | |
| 402-589, gnl|loxAfr1|scaffold_5895 (30805-31058) | |
| 402-589, gnl|mm7|chr1 (131910068-131909834) | |
| 402-589, gnl|Mm7|chr1 (131909875-131910062) | |
| 402-589, gnl|monDom2|scaffold_13 (7419503-7419763) | |
| 402-589, gnl|oryCun1|scaffold_128399 (619-868) | |
| 402-589, gnl|panTro1|chr1 (185282456-185282707) | |
| 402-589, gnl|rheMac2|chr1 (164791392-164791141) | |
| 402-589, gnl|rn3|chr13 (44911779-44911545) | |
| 402-589, gnl|tetNig1|chr11 (10612607-10612817) | |
| 402-589, gnl|xenTro1|scaffold_19 (3741344-3741572) | |
| 865-1056, gnl|bosTau2|chr12 (30916701-30916513) | |
| 865-1056, gnl|Hg17|chr17 (38961377-38961195) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| ese (0.126502) |